BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE09RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1270 1273 0.0
>3x_Contig1270
Length = 7505
Score = 1273 bits (642), Expect = 0.0
Identities = 732/753 (97%), Gaps = 7/753 (0%)
Strand = Plus / Plus
Query: 47 ctgcaaactcctgatcctctcattgatatcagtagccctaggggacttgctttgggctaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgcaaactcctgatcctctcattgatatcagtagccctaggggacttgctttgggctaa 318
Query: 107 cctggcttgtcgagacctgtaaaactgcttagcaagctcaatcttgccaggaatcgactt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctggcttgtcgagacctgtaaaactgcttagcaagctcaatcttgccaggaatcgactt 378
Query: 167 caaatctgtaaatttaaacttggacatgttgcactggttgtttgtctcaactgatgtaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaatctgtaaatttaaacttggacatgttgcactggttgtttgtctcaactgatgtaac 438
Query: 227 aactaccaacttcaaagtaaactaaactcttaactgacatttgtgtattgtgtttcggta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aactaccaacttcaaagtaaactaaactcttaactgacatttgtgtattgtgtttcggta 498
Query: 287 tttaaaggtttacttctccaatattcttaggttctttaaatattaaggcttttcggtttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttaaaggtttacttctccaatattcttaggttctttaaatattaaggcttttcggtttt 558
Query: 347 aatgttatccggtgaagaccagcgatgggcatgaagaaaaagcatttaaaaaccgtttaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 559 aatgttatccggtgaagaccagcgatgggcatgaagaaaaagcatttaaaaaccg-ttaa 617
Query: 407 agggcccactaactgctcaattggtttagtttgacaagttatcatggcttactgtcaagt 466
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaggcccactaactgctcaattggtttagtttgacaagttatcatggcttactgtcaagt 677
Query: 467 ggttatctcgaaagagattctggatgctgtgttacaattggtttccacatattcaaatta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggttatctcgaaagagattctggatgctgtgttacaattggtttccacatattcaaatta 737
Query: 527 tatatcaagatatgtggactatttgaacatcc-tatcgcagtccagcgtcgtgtgagcac 585
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 738 tatatcaagatatgtggactatttgaacaaccttatcgcagtccagcgtcgtgtgagcac 797
Query: 586 gctacgtttcgaatggatgacattgatcaagtacgttaagaaactacngttcatggctga 645
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 798 gctacgtttcgaaaggatgacattgatcaagtacgttaagaaactacggttcatggctga 857
Query: 646 tgttttacacagctggtcgtttgaaagtgagaatgatcttattgaaaaacgg-taaacga 704
||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 858 tgttttacacagctggtcgtttgaaggtgagaatgatcttattggaaaacggttaaacga 917
Query: 705 attgatcgatccattgggagcct-tttaatcaaa-tgtttgaaat-ttaaaactggtgaa 761
| ||||||||||||||||||| | |||||||||| |||||||||| ||| | ||| ||||
Sbjct: 918 agtgatcgatccattgggagcatatttaatcaaagtgtttgaaatattagacctgttgaa 977
Query: 762 cttctacatt-cccagccgttgagaggcaaaac 793
|||||||||| | |||||| |||||||| ||||
Sbjct: 978 cttctacattacacagccgatgagaggcgaaac 1010
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6614
Number of Sequences: 1807
Number of extensions: 6614
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)