BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE10FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1586 0.0
>3x_Contig1748
Length = 22566
Score = 1586 bits (800), Expect = 0.0
Identities = 823/831 (99%)
Strand = Plus / Plus
Query: 88 ttcctattagaaccatcagatattttggaatccttaatttcgaacccaattccttctcag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttcctattagaaccatcagatattttggaatccttaatttcgaacccaattccttctcag 706
Query: 148 ctcgttagactaaatcactctttggataacggacggtgctcagtgacaatttcccgtttg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctcgttagactaaatcactctttggataacggacggtgctcagtgacaatttcccgtttg 766
Query: 208 ctacaaggtatattaacgagatgtaatgagactagctctgtgtctttattcagcagtcat 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctacaaggtatagtaacgagatgtaatgagactagctctgtgtctttattcagcagtcat 826
Query: 268 agaagcaaaaagaaccttaactctgcagagacaaatcaccttggcgcgggggatttatta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 agaagcaaaaagaaccttaactctgcagagacaaatcaccttggcgcgggggatttatta 886
Query: 328 tcatatttgctcaaatattttgactcgttggataattcggcagttgaagacttttattca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tcatatttgctcaaatattttgactcgttggataattcggcagttgaagacttttattca 946
Query: 388 gattttatggttttcttaaaggaagttttgagtaactatactagctatagttcaatatcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 gattttatggttttcttaaaggaagttttgagtaactatactagctatagttcaatatcg 1006
Query: 448 tttccgttattgcaattaattgccttaatcagcgaaaaacttgactactctagtttgggt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 tttccgttattgcaattaattgccttaatcagcgaaaaacttgactactctagtttgggt 1066
Query: 508 caagaacgccgagtcagaaaggaaataactgaatcatttattaagttactaaacaatagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 caagaacgccgagtcagaaaggaaataactgaatcatttattaagttactaaacaatagt 1126
Query: 568 ctcagctcggatattatggatagcaacaataaagaagacattatagcagctttgtatttt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 ctcagctcggatattatggatagcaacaataaagaagacattatagcagctttgtatttt 1186
Query: 628 gttgttgagaggctntcatatgttgtcaatgaagttaatcaaggtgataagttcaacagc 687
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 gttgttgagaggctttcatatgttgtcaatgaagttaatcaaggtgataagttcaacagc 1246
Query: 688 actttgacctccattgttatctattccatagtgccttacagcaaaaggatagcagaaatc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 actttgacctccattgttatctattccatagtgccttacagcaaaaggatagcagaaatc 1306
Query: 748 tcccccgatgtattgcacttcatgaatttgatagcaccaatcggagagagaagttaacct 807
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1307 tcccccgatgtattgcacttcatgaatttgatagcaccaatcggagagagagttaaacct 1366
Query: 808 tggaaattattccttaacgaatttttcacggattctaaaacgttacgggcgctgttagag 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1367 tggaaattattccttaacgaatttttcacggattctaaaacgttacgggcgctgttagag 1426
Query: 868 acagatgacaaatcttgggagttcatattttaccactggtctctatactac 918
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1427 acagatgacaaatcttggagtttcatattttaccactggtctctatactac 1477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6319
Number of Sequences: 1807
Number of extensions: 6319
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)