BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE10RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1312 0.0
>3x_Contig1590
Length = 13653
Score = 1312 bits (662), Expect = 0.0
Identities = 735/750 (98%), Gaps = 7/750 (0%)
Strand = Plus / Plus
Query: 49 atagaatt-acaagtggtaaattccgggttgtgggtcatatcaataccttcgtttctgaa 107
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5878 atagaattcacaagtggtaaattccgggttgtgggtcatatcaataccttcgtttctgaa 5937
Query: 108 ttgtctaccaatttcgtaaactctatccataccaccgacaactaattccttcaagaacaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5938 ttgtctaccaatttcgtaaactctatccataccaccgacaactaattccttcaagaacaa 5997
Query: 168 ttctggggcaattctcatgtacatatccatgtctagatcattatgatgagtaacaaatgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5998 ttctggggcaattctcatgtacatatccatgtctagatcattatgatgagtaacaaatgg 6057
Query: 228 ctttgcagtggcaccaccagcaataacgttcatcattggggtttccacttcgataaagtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6058 ctttgcagtggcaccaccagcaataacgttcatcattggggtttccacttcgataaagtt 6117
Query: 288 tctggtatccaagaactttctaacgtaactaatgatcttagaacgagtaatgaagcggtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6118 tctggtatccaagaactttctaacgtaactaatgatcttagaacgagtaatgaagcggtt 6177
Query: 348 tctggcatccttattcataatcaagtctaagtatctctttctgtatctcaattcctggtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6178 tctggcatccttattcataatcaagtctaagtatctctttctgtatctcaattcctggtc 6237
Query: 408 cttgaaaccaaagtgatcggttggcaacatgtgcaaacatggggtcaaaagttgaatacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6238 cttgaaaccaaagtgatcggttggcaacatgtgcaaacatggggtcaaaagttgaatacg 6297
Query: 468 ggaaacaaagacagaaatttcaccttcaccaccttttctttggagaagttctaccaacat 527
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6298 ggaaacaaagacagaaatttcaccttcaccacc-tttctttggagaagttctaccaacat 6356
Query: 528 aaccttcgacaccaacgatatcacctctcttgattagactatggtcatcttcatatgaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6357 aaccttcgacaccaacgatatcacctctcttgattagactatggtcatcttcatatgaag 6416
Query: 588 attcggtgtggtagtcctgtaattgagacataactt-gacttcgacaccatcaccatgca 646
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6417 attcggtgtggtagtcctgtaattgagacataacttggacttcgacaccatcaccatgca 6476
Query: 647 gaacgtagaacttcaaatttggaaccagattctctcttggcatggattcttacagccata 706
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 6477 gaacgtagaacttc-aatttggaaccagattctctcttggcatggattctaccagcaata 6535
Query: 707 ggaaaccttttcctctgggaaaagtttcaccacgcttcaagttggcctattttgaacaaa 766
||||||||||||||| || |||||||||||||||||||||||||| || |||| |||||
Sbjct: 6536 -gaaaccttttcctct-ggtaaagtttcaccacgcttcaagttggcata-tttggacaaa 6592
Query: 767 aattttggcaaagtaacagaaacctggaac 796
|||| |||||||||||||||||| ||||||
Sbjct: 6593 aattctggcaaagtaacagaaacttggaac 6622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7581
Number of Sequences: 1807
Number of extensions: 7581
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)