BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE11FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1497 0.0
>3x_Contig1649
Length = 14442
Score = 1497 bits (755), Expect = 0.0
Identities = 838/855 (98%), Gaps = 9/855 (1%)
Strand = Plus / Plus
Query: 87 cacatttttcctatttatgattgattctctaaaatctaaaacaacaaaataaagggaagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2039 cacatttttcctatttatgattgattctctaaaatctaaaacaacaaaataaagggaagc 2098
Query: 147 cttgtaatcacaacaaaaccaaatattcgaagaataaaaatcctccttcaataatcgttt 206
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2099 cttgtaatcacaacaaaaccaaataagcgaagaataaaaatcctccttcaataatcgttt 2158
Query: 207 ggccttattttgataagatattaccatagtctatattagttcgaggtgaacctccttcca 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2159 ggccttattttgacaagatattaccatagtctatattagttcgaggtgaacctccttcca 2218
Query: 267 catgatcaactagtactgtacatcagcacattagattagtgaaccatctcgcatgtccga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2219 catgatcaactagtactgtacatcagcacattagattagtgaaccatctcgcatgtccga 2278
Query: 327 acccatcaattcaacgggagaagataataatccattttggagaagatggatcccaggaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 acccatcaattcaacgggagaagataataatccattttggagaagatggatcccaggaac 2338
Query: 387 taatgcttcagaagaaaacagtcaagatactcctactaattcgtcttctgaacaccagga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2339 taatgcttcagaagaaaacagtcaagatactcctactaattcgtcttctgaacaccagga 2398
Query: 447 cgaaggatggctgaaaaggtatataccagcttggttctccaatcaagaaagtttagaaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2399 cgaaggatggctgaaaaggtatataccagcttggttctccaatcaagaaagtttagaaat 2458
Query: 507 cagcgacagtacatcataccatcagcttaccaaaaaacaaattaaaatattggaaaatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2459 cagcgacagtacatcataccatcagcttaccaaaaaacaaattaaaatattggaaaatga 2518
Query: 567 agcagagcaaggaatacttaaaggacatgatacatgttgctggtttaatgaaactttgaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2519 agcagagcaaggaatacttaaaggacatgatacatgttgctggtttaatgaaactttgaa 2578
Query: 627 taataaattactcgattctgatggggttttatccgtttacaacactggcagcgcgacttg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2579 taataaattactcgattctgatggggttttatccgtttacaacactggcagcgcgacttg 2638
Query: 687 tcccttgccattgtccaaatatccattattaccacagcgaanatctactatcataaatgc 746
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2639 tcccttgccattgtccaaatatccattattaccacagcgaaaatctactatcataaatgc 2698
Query: 747 caaanattcaactatcataccangtgtttctccaactgagtacatgcatgaactgccact 806
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2699 caaaaattcaactatcataccaggtgtttctccaactgagtacatgcatgaactgccact 2758
Query: 807 taaaacgaaattagcccatgccatanaaaa-cattac-attttatcagtgagaaacatc- 863
||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2759 taaaacgaaattagcccatgccataaaaaaccattacaattttatcagtgagaaacatct 2818
Query: 864 ttactt-aaacagcatttcactctt-atttcaatg-agacaccat-atagtc-tatcatt 918
|||||| |||||||||| ||||||| ||||||||| ||||||||| |||||| |||||||
Sbjct: 2819 ttacttaaaacagcattccactcttaatttcaatgaagacaccataatagtcatatcatt 2878
Query: 919 acac-gatctttgcc 932
|||| ||||||||||
Sbjct: 2879 acacggatctttgcc 2893
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6673
Number of Sequences: 1807
Number of extensions: 6673
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)