BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE11RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1633 1082 0.0
>3x_Contig1633
Length = 12594
Score = 1082 bits (546), Expect = 0.0
Identities = 636/650 (97%), Gaps = 12/650 (1%)
Strand = Plus / Plus
Query: 57 tggacctatcttactcattgcctttacgcgttagagactacgacatcgccaaaccaggct 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggacctatcttactcattgcctttacgcgttagagactacgacatcgccaaaccaggct 60
Query: 117 tgaccttcggattagacttgtcatttttctagatcaaagtacacacttgcaaactattcc 176
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgac-ttcggattagacttgtcatttttctagatcaaagtacacacttgcaaactattcc 119
Query: 177 atctaagtataaaattcgagaagtggttcacaccctctgatattaaaatcaaagtataac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atctaagtataaaattcgagaagtggttcacaccctctgatattaaaatcaaagtataac 179
Query: 237 atttaaacatcattttttcctaaaaacatatataaatggttaaagtcaatattctgtata 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atttaaacatcattttttcctaaaaacatatataaatggttaaagtcaatattctgtata 239
Query: 297 aaagaaaaacaatattcaagtaatattcaggagttgcattaactgacatctaagagttac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaagaaaaacaatattcaagtaatattcaggagttgcattaactgacatctaagagttac 299
Query: 357 tacgacctattacgttgaaaaggtaaatgctggactttcaatagatcatatcgcgaaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tacgacctattacgttgaaaaggtaaatgctggactttcaatagatcatatcgcgaaaat 359
Query: 417 tactgtatttacgtatacgttttgaatgtggattgtatcttttatattcgatgatgaagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tactgtatttacgtatacgttttgaatgtggattgtatcttttatattcgatgatgaagc 419
Query: 477 agaaaagtctcacaaagtatgcaaagcactccaatatggggtcgaatactcaattggaag 536
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 420 agaaaagtctcacaaagtatgcaaggcactccaatatggggtcgaatactcaattggaag 479
Query: 537 atccgcaaaatgtacttttaggatacnaaacggat-aaagtatttctcgtgttcatttac 595
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 480 atccgcaaaatgtacttttaggatac-aaacggataaaagtatttctcgtgttcatttac 538
Query: 596 tgat-aaatttgatggaagtgaccttat-ataacaaat-agggtaaac-tacaaag-tta 650
|||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||
Sbjct: 539 tgataaaatttgatggaagtgaccttataataacaaataagggtaaacttacaaagttta 598
Query: 651 atgaag-aataatttcctt-gatgagacc-ttgtggt-cacaatcagaat 696
|||||| ||||||| |||| ||||||||| ||||||| ||||||||||||
Sbjct: 599 atgaagaaataattcccttagatgagaccattgtggtacacaatcagaat 648
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7633
Number of Sequences: 1807
Number of extensions: 7633
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)