BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE12FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1552 0.0
>3x_Contig1606
Length = 11468
Score = 1552 bits (783), Expect = 0.0
Identities = 823/833 (98%), Gaps = 3/833 (0%)
Strand = Plus / Plus
Query: 87 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5880 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 5939
Query: 147 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 5999
Query: 207 caacacgttnattgcnaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 266
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6000 caacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 6059
Query: 267 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6060 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 6119
Query: 327 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6120 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 6179
Query: 387 tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6180 tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 6239
Query: 447 aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6240 aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 6299
Query: 507 tataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6300 tataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaaga 6359
Query: 567 aattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcggc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6360 aattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcggc 6419
Query: 627 agctgcgtaagcagcgttagtcaaagtctggttggattgctgttgatgcaatcttttttc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6420 agctgcgtaagcagcgttagtcaaagtctggttggattgctgttgatgcaatcttttttc 6479
Query: 687 ttcttcagattgttgctgaggtaggccaaacattattattgattgtatttctgatatacg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6480 ttcttcagattgttgctgaggtaggccaaacattattattgattgtatttctgatatacg 6539
Query: 747 tcacaatcttttttaactggttagactgcgctaataactataccaatagatagtgatata 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6540 tcacaatcttttttaactggttagactgcgctaataactataccaatagatagtgatata 6599
Query: 807 atgcactcatgcagcagcaaaacatgtttgtgcatactcaaatattctacaaatgtattt 866
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6600 atgcactcatgcagcagcaaaacatgtttgtgcatactcaaatattctac-aatgtattt 6658
Query: 867 gatccaaaatc-ttaaattttggaaa-ttcacatcactgggtacgtcagtgtc 917
||| | ||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 6659 gattccaaatctttaaattttggaaatttcacatcacttggtacgtcagtgtc 6711
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6784
Number of Sequences: 1807
Number of extensions: 6784
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)