BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF01RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 844 0.0
>3x_Contig1607
Length = 10159
Score = 844 bits (426), Expect = 0.0
Identities = 435/438 (99%)
Strand = Plus / Minus
Query: 44 gctttaaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6496 gctttaaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtg 6437
Query: 104 cgtgggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagagggg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6436 cgtgggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagagggg 6377
Query: 164 aatattgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6376 aatattgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttac 6317
Query: 224 gatgaaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggattta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6316 gatgaaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggattta 6257
Query: 284 tacttggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacatt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6256 tacttggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacatt 6197
Query: 344 ggtaacgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6196 ggtaacgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggt 6137
Query: 404 aactgtgtgactgtgttctatgcgacgtatatcttctttgatccaattggggctaacttg 463
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6136 aactgtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttg 6077
Query: 464 gtggaaattattgggccc 481
|| ||||||||||||||
Sbjct: 6076 ttgaaaattattgggccc 6059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,268
Number of Sequences: 1807
Number of extensions: 20268
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)