BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF03FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1548 0.0
>3x_Contig1676
Length = 15800
Score = 1548 bits (781), Expect = 0.0
Identities = 823/833 (98%), Gaps = 3/833 (0%)
Strand = Plus / Minus
Query: 87 gaaagaatctcaagtaattttgtttgcatcgattctatttcctcttgaccagttagaaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10161 gaaagaatctcaagtaattttgtttgcatcgattctatttcctcttgaccagttagaaat 10102
Query: 147 gccaaaatatcacctggtaatttttgggtggtatgaatttgaaagatggtggtgatcgca 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10101 accaaaatatcacctggtaatttttgggtggtatgaatttgaaagatggtggtgatcgca 10042
Query: 207 gcatttatattttttccttctggttgaagtgtatagtgaatatccacaggaaagcgtcta 266
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041 gcatttatatagtttccttctggttgaagtgtatagtgaatatccacaggaaagcgtcta 9982
Query: 267 ccaggaacattaaatatcggacaatcaaagaagaacttggagaatttagtagcattcata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9981 ccaggaacattaaatatcggacaatcaaagaagaacttggagaatttagtagcattcata 9922
Query: 327 gttgcactagaaattataagtcgaagatcttttctgtcttgtaaaataccccttagcaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9921 gttgcactagaaattataagtcgaagatcttttctgtcttgtaaaataccccttagcaac 9862
Query: 387 cccaacaaaatatctgtagataacgtgcgctcgtgagcctcgtcaatcattattgcacta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 cccaacaaaatatctgtagataacgtgcgctcgtgagcctcgtcaatcattattgcacta 9802
Query: 447 tacgatgatagttgtgggtcattaagaaattctcgaagtaacatcccatctgtcgtatat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9801 tacgatgatagttgtgggtcattaagaaattctcgaagtaacatcccatctgtcgtatat 9742
Query: 507 tttaagattgttttatcaggcgttgttcggtcatcaaatctgatattataaccgacttct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741 tttaagattgttttatcaggcgttgttcggtcatcaaatctgatattataaccgacttct 9682
Query: 567 ttccccaatattacatccatttcatcagcaactcttgaagcaatactagttgcagcaact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9681 ttccccaatattacatccatttcatcagcaactcttgaagcaatactagttgcagcaact 9622
Query: 627 ctacgtggttgtgtgcaaaccacgcattttccatcgttggtgtaaccatcctccacaagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9621 ctacgtggttgtgtgcaaaccacgcattttccatcgttggtgtaaccatcctccacaagg 9562
Query: 687 aactgtggaagttgggtggttttcccagaccccgtttcaccaacaacaatcaaaatttga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9561 aactgtggaagttgggtggttttcccagaccccgtttcaccaacaacaatcaaaatttga 9502
Query: 747 tgttgccgaatactatccaaaatttcttgtctatattgataaactggcaatgacttcctc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9501 tgttgccgaatactatccaaaatttcttgtctatattgataaactggcaatgacttcctc 9442
Query: 807 gtttcttttatactcttcatcttgttaaattgttcttctaacgcttcagccaatctaccg 866
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9441 gtttctttaatactcttcatcttgttaatttgttcttctaacgcttcagccaatctaccg 9382
Query: 867 tcttc-acaggttttaaaatatctgtcgtattcatcagtaaa-tcaatcatgg 917
||||| ||||||| | |||||||||||||| ||||||||||| ||||||||||
Sbjct: 9381 tcttcaacaggttctgaaatatctgtcgta-tcatcagtaaagtcaatcatgg 9330
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7620
Number of Sequences: 1807
Number of extensions: 7620
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)