BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF03RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1257 0.0
>3x_Contig1741
Length = 21706
Score = 1257 bits (634), Expect = 0.0
Identities = 692/708 (97%), Gaps = 3/708 (0%)
Strand = Plus / Minus
Query: 38 aatgcttggttctctattgtccaacctattattggtattgggattctgtttcttgttcgg 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3120 aatgcttggttctctattgtccaacctattattggtattgggattctgtttcttgttcgg 3061
Query: 98 tggatataacagagttcagcagaaattcaaccagactgcagcacaaacgatgagttcttt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3060 tggatataacagagttcagcagaaattcaaccagactgcagcacaaacgatgagttcttt 3001
Query: 158 gttagccatttcaagtgcatcgttattgattcctgctgcgttcaaggccactttacctca 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3000 gttagccatttcaagtgcatcgttattgattcctgctgcgttcaaggccactttacctca 2941
Query: 218 cgataagggcacttctcatcttgttgatgataagattctgtcactatcaagatctacttc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2940 cgataagggcacttctcatcttgttgatgataagattctgtcactatcaagatctacttc 2881
Query: 278 catcgtgctattggtcgtttacgtattgtttttgattttccaacttggttctcatcgtgt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2880 catcgtgctattggtcgtttacgtattgtttttgattttccaacttggttctcatcgtgt 2821
Query: 338 catgttcgaagaacaaaccgaagaaactgaagaagtattgaacatccatcaacaacacga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2820 catgttcgaagaacaaaccgaagaaactgaagaagtattgaacatccatcaacaacacga 2761
Query: 398 acaaatttcagaatcaatgagtttgagatcctcgttgatcttcttagcaatcactactat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2760 acaaatttcagaatcaatgagtttgagatcctcgttgatcttcttagcaatcactactat 2701
Query: 458 tctcgtgtccatctgtgccgatttcctcgttgggaccatcgatgacatcgtcgtgagtac 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2700 tctcgtgtccatctgtgccgatttcctcgttgggaccatcgatgacatcgtcgtgagtac 2641
Query: 518 cggtctatcgaaaactttcatcggtcttattgtgattccaatcgtcnngcatgcagcaga 577
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2640 cggtctatcgaaaactttcatcggtcttattgtgattccaatcgtcggcaatgcagcaga 2581
Query: 578 gcacgtaacaagtgtcatcgttggcatgaatgacaaaatggactt-gcccttagtgttgc 636
||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||
Sbjct: 2580 gcacgtaacaagtgtcatcgttgccatgaaggacaaaatggacttggccctaagtgttgc 2521
Query: 637 cattgggttctcactacaaattgccctttttgtgactccattcatgttactagtgggatg 696
|||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 2520 cattgggtcctcactacaaattgcccttttcgtgactccattcatggtactagtgggatg 2461
Query: 697 ggcctttg-tgtgcccaagacattgaac-tctctacattcgagaccgt 742
|||| ||| |||||| | |||||||||| |||||||||||||||||||
Sbjct: 2460 ggccattgatgtgccaatgacattgaacttctctacattcgagaccgt 2413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7195
Number of Sequences: 1807
Number of extensions: 7195
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)