BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 944 0.0
>3x_Contig985
Length = 5529
Score = 944 bits (476), Expect = 0.0
Identities = 568/592 (95%), Gaps = 5/592 (0%)
Strand = Plus / Minus
Query: 47 taaccttttattaggtaacctcaatgttttggcagctttatactcctttt-aacaaaccg 105
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3693 taaccttttattaggtaacctcaatgttttggcagctttatactccttttcaacaaaccg 3634
Query: 106 gtaaaatgatggaggtagaggttcatttattaagtgagaaataggttccaagatatgatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 gtaaaatgatggaggtagaggttcatttattaagtgagaaataggttccaagatatgatc 3574
Query: 166 gaattgggggatatagtcagcttcttccttgttagtcttggcttccttactaagtgattc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gaattgggggatatagtcagcttcttccttgttagtcttggcttccttactaagtgattc 3514
Query: 226 attgatcatggctttcttacgttcactctttagcctagctcttatttnccggtatagagt 285
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3513 attgatcatggctttcttacgttcactctttagcctagctcttattt-ccggtatagagt 3455
Query: 286 taccaaaactagatgttacatttcccgtattgtgttgctcaggagggagtgagctttgcc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 taccaaaactagatgttacatttcccgtattgtgttgctcaggagggagtgagctttgcc 3395
Query: 346 ctccagatcctgatttgttgtacttattggaagatggacgctttcccaacgttattggat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3394 ctccagatcctgatttgttgtacttattggaagatggacgctttcccaacgttattggat 3335
Query: 406 tcacctggttgtacgtgttcattgctttataagctaattttgaccaatatattaagcgta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3334 tcacctggttgtacgtgttcattgctttataagctaattttgaccaatatattaagcgta 3275
Query: 466 aagcgagccacaaccgtctgcaacagttagtattggtttagaagttttatgttagtcttt 525
| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 3274 aggcgagccacaaccgtctgcaacagttagtattggttagtaggttttatggtagtcttt 3215
Query: 526 ttgcccgggattcttag-ttattacccagtttcattgggttttgtaactcttttgcccat 584
||||| | |||||||| ||||||| |||||||||||||||||||| |||||||||| |
Sbjct: 3214 ttgccgtgaattcttagtttattactcagtttcattgggttttgtagctcttttgccagt 3155
Query: 585 tttc-atcactaatttttcagttgaaaatgaacccagtcctc-gactgaaca 634
|||| |||| || ||||||||| |||||||| || ||| ||| |||||||||
Sbjct: 3154 tttcaatcagtattttttcagtagaaaatgagccaagtactcagactgaaca 3103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8432
Number of Sequences: 1807
Number of extensions: 8432
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)