BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF05FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1325 1253 0.0
3x_Contig153 123 7e-28
>3x_Contig1325
Length = 7053
Score = 1253 bits (632), Expect = 0.0
Identities = 752/776 (96%), Gaps = 15/776 (1%)
Strand = Plus / Plus
Query: 135 catattatgctatgtaaaggaagaagtgtatggtgaatcaaaacgaagtaccatcggatc 194
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 catattatgctatgtaaaggaagaagtgtatg-tgaatcaaaacgaagtaccatcggatc 59
Query: 195 ttcagagttaaaaactacattcgattggggaaatgatctcaaaattgtttggaagaggaa 254
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 60 ttcagagttaaaaactacattcgattggg-aaatgatctcaaaattgtttggaagaggaa 118
Query: 255 agttctttcgaaacgtggctcttcaagtcagatttaacagttctgaagccgtcgaatttc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 agttctttcgaaacgtggctcttcaagtcagatttaacagttctgaagccgtcgaatttc 178
Query: 315 gaccattgcactcatcgctaatatcaagagcagagctgtatgtcaatgaattgcgagagt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gaccattgcactcatcgctaatatcaagagcagagctgtatgtcaatgaattgcgagagt 238
Query: 375 tagaggacctgttgtcgcagggtggatccttcgatcttgagaaacagaagaattttgcca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tagaggacctgttgtcgcagggtggatccttcgatcttgagaaacagaagaattttgcca 298
Query: 435 aactatctacgattgtggattcgtattccaaatacagagaagaagtcaatcagtataaag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aactatctacgattgtggattcgtattccaaatacagagaagaagtcaatcagtataaag 358
Query: 495 aactacaggagatactggaattagatccatcattacgagaagaagccgaagcagacatag 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aactacaggagatactggaattagatccatcattacgagaagaagccgaagcagacatag 418
Query: 555 cagcactactcccagatttgaacaagacaggggactctttattgaataaactcctaccgc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagcactactcccagatttgaacaagacaggggactctttattgaataaactcctaccgc 478
Query: 615 ctcatccttttgcagataaacccagtctattagaactaaggcctggcgtcggtggttctg 674
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 479 ctcatccttttgcagataaacccagtatattagaactaaggcctggtgtcggtggttctg 538
Query: 675 aagctatgatattcactcaagatctgttgaacatgtacattaactatgcaaattatcata 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aagctatgatattcactcaagatctgttgaacatgtacattaactatgcaaattatcata 598
Query: 735 aatggaaaatggggaccta-tatcaaaaactgagaaaacgca-gcg-tagcggagtcctg 791
|||||||| || ||||| |||||||||||||||| |||| ||| |||||||||||||
Sbjct: 599 aatggaaat--ggaacctaatatcaaaaactgagaa--cgcaagcggtagcggagtcctg 654
Query: 792 ggagcaatcttga-tatagatgaaccaggttcttatgataaattgaaa-tcgaag-cgga 848
| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 655 gaagcaatcttgaatatagatgaaccaggttcttatgataaattgaaattcgaagccgga 714
Query: 849 gntcatcgtgttcaaaga-tgcctgncaca-aatcaatggggag-actcatacttc 901
| |||||||||||||||| |||||| |||| |||||| ||| || |||||||||||
Sbjct: 715 gttcatcgtgttcaaagagtgcctgccacagaatcaaagggaagaactcatacttc 770
>3x_Contig153
Length = 1175
Score = 123 bits (62), Expect = 7e-28
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 95 ctttctatattaaatatgaaaaatctttgaaagtttgatacatattatgctatgtaaagg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctttctatattaaatatgaaaaatctttgaaagtttgatacatattatgctatgtaaagg 3
Query: 155 aa 156
||
Sbjct: 2 aa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6609
Number of Sequences: 1807
Number of extensions: 6609
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)