BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF05RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig441 971 0.0
>3x_Contig441
Length = 2196
Score = 971 bits (490), Expect = 0.0
Identities = 636/670 (94%), Gaps = 11/670 (1%)
Strand = Plus / Minus
Query: 46 tagtttcaaaccattgaaatatgccttaacgccta-tgttcattaccaatattctaacaa 104
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1445 tagtttcaaaccattgaaatatgccttaacgcctagtgttcattaccaatattctaacaa 1386
Query: 105 acatcaataaagagaaacccgtagagctcgaaatgagtaaatacttcatccccgatattg 164
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1385 acatcaataaagagaaacccgtagagctcaaaatgagtaaatacttcatccccgatattg 1326
Query: 165 attctaaggttttagaaagaaccaagctaccgacaaaag-tgtttgccagacatggattt 223
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1325 attataaggttttagaaagaaccaagctaccgacaaaagctgtttgccagacatggattt 1266
Query: 224 actcatgtgaatatttctgatgatattccggggggatacaaattgatttcaagtattcta 283
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1265 actcatgtgaatatttctgatgatattcgggggggatacaaattgatttcaagtattcta 1206
Query: 284 aaatgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatcta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 aaatgccatagcatggaagaagtaaatgctattgggaagaaatttcaattggaggatcta 1146
Query: 344 gttgaaaacaagagcataaagaaaagccctaactatgttctcatagctagtaaagcgtca 403
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 gttgaaaacaagagcaaaaagaaaagccctaactatgttctcatagctagtaaagcgtca 1086
Query: 404 atggctaaaaaattcaataagtgcgttaaagatgctgacaagaataagatagtttttgtt 463
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1085 atggctaaaaaattcaataagtgcgttaaagatgctgacaagaataagaaagtttttgtt 1026
Query: 464 gttgaatggaatttgttgcgtgaaaagcattttcgacttggat-taaatctagaagatca 522
||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1025 gttgaatggaa-ttggtgcgtgaaaagcattttcgacttggatataaatctagaagatca 967
Query: 523 tgaatatgtcatttat-attaggaaagtaacccca-aatggctacgatggtattagaata 580
|||||||||||||||| || || || ||||||||| ||||||||||||||||| ||||||
Sbjct: 966 tgaatatgtcatttataataagtaatgtaaccccagaatggctacgatggtataagaata 907
Query: 581 tgtagtattatgt-acgatttattcgatagttgaattctactcattagtggaggttattg 639
||||||| ||||| ||||||||| ||||||| |||||||||| ||| ||||||| ||
Sbjct: 906 tgtagta-tatgtaacgatttatcgaatagttg-attctactcaataggtgaggtta-tg 850
Query: 640 caaagaaattactatttccttggtaccggtgattggggccacccaagggaaaaagaatca 699
|||||| ||||||||||||||| ||| | ||||||| | || ||||||||||||||||||
Sbjct: 849 caaagatattactatttccttgttactgttgattggag-caaccaagggaaaaagaatca 791
Query: 700 atgcttgaaa 709
||||| ||||
Sbjct: 790 atgctagaaa 781
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,321
Number of Sequences: 1807
Number of extensions: 16321
Number of successful extensions: 241
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)