BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF06RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 884 0.0
>3x_Contig1613
Length = 13977
Score = 884 bits (446), Expect = 0.0
Identities = 534/554 (96%), Gaps = 7/554 (1%)
Strand = Plus / Minus
Query: 48 acgcaaaa-aaactttgaat-aattgttggttgaattggatgggttttcccaaacaagcg 105
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 acgcaaaacaaactttgaatcaattgttggttgaattggatgggttttcccaaacaagcg 2233
Query: 106 gtataattatcatcggtgccactaacttcccagaatcattggataaggctttgacaagac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 gtataattatcatcggtgccactaacttcccagaatcattggataaggctttgacaagac 2173
Query: 166 caggtatattcgataaggtcgtcaatgttgacttacctgatgttcgcgggcgtgctgaca 225
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 caggtagattcgataaggtcgtcaatgttgacttacctgatgttcgcgggcgtgctgaca 2113
Query: 226 ttttgagacatcatatgaagaaggttactgttgctcctgatgtggacccaactatcattg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 ttttgagacatcatatgaagaaggttactgttgctcctgatgtggacccaactatcattg 2053
Query: 286 caagatgaaccccatgtctttctggtgctgagttgatgaatttagttaaccaagccgccg 345
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 caagaggaaccccaggtctttctggtgctgagttgatgaatttagttaaccaagccgccg 1993
Query: 346 tatacgcttgtcagaaaaatgctattgctgtcgatatgcagcactttgaatgggcaaagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1992 tatacgcttgtcagaaaaatgctattgctgtcgatatgcagcactttgaatgggcaaagg 1933
Query: 406 ataaaatcttgatgggtgctgaaaggaaaactatggttctcactgaagctactaaaa-ag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1932 ataaaatcttgatgggtgctgaaaggaaaactatggttctcactgaagctactaaaagag 1873
Query: 465 ccaccgcttatcatgaatccgggcatgcattgatggcactgtacactgtccgggcaacgc 524
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1872 ccaccgcttatcatgaagccgggcatgcattgatggcactgtacactgccggggcaacgc 1813
Query: 525 cattatacatatc-actatcttggcaagagg-aaggcattaagt-ttactttccaactt- 580
||||||||| | | ||||||||| ||||||| | ||||||| || | ||||||||||||
Sbjct: 1812 cattatacaaagcaactatcttgccaagaggcagggcattaggtatcactttccaacttc 1753
Query: 581 ctggaatggataag 594
||| ||||||||||
Sbjct: 1752 ctgaaatggataag 1739
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6290
Number of Sequences: 1807
Number of extensions: 6290
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)