BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF08FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1483 0.0
>3x_Contig1799
Length = 39855
Score = 1483 bits (748), Expect = 0.0
Identities = 828/852 (97%), Gaps = 3/852 (0%)
Strand = Plus / Minus
Query: 85 tacccttggtttccgggtgttggtagatatgagcgtgggatcttgaccatcagttgtact 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36210 tacccttggtttccgggtgttggtagatatgagcgtgggatcttgaccatcagttgtact 36151
Query: 145 tgtcatagaaggatccaggccattcacagtaggatccaattcaaaatcaagcctcatgtt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36150 tgtcatagaaggatccaggccattcacagtaggatccaattcaaaatcaagcctcatgtt 36091
Query: 205 cccatcttcagtcttgttgccttgaaatgccgagagatcgttcatatcatcatctataga 264
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36090 cccatcttcagtcgcgttgccttgaaatgccgagagatcgttcatatcatcatctataga 36031
Query: 265 catcgtttacggtactgtctcaaaaaagcaaagagcacacacacttgtagatataaaaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36030 catcgtttacggtactgtctcaaaaaagcaaagagcacacacacttgtagatataaaaaa 35971
Query: 325 tactattccgtgccaaatatgaggacttcgacaactgagagcgagagacactatttatgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35970 tactattccgtgccaaatatgaggacttcgacaactgagagcgagagacactatttatgt 35911
Query: 385 tatcttaaatcgataatgctcttcgacttcagttaagtttggcgtagtatatttcacgga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35910 tatcttaaatcgataatgctcttcgacttcagttaagtttggcgtagtatatttcacgga 35851
Query: 445 aaggaaaagaaataaagtcacgtgaacaatatttacattttcttttggttcgtctggtga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35850 aaggaaaagaaataaagtcacgtgaacaatatttacattttcttttggttcgtctggtga 35791
Query: 505 cattatcagcgtcaagaatctcaacgcagacatttattgcgacagacacagtgacgcgtc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35790 cattatcagcgtcaagaatctcaacgcagacatttattgcgacagacacagtgacgcgtc 35731
Query: 565 gaaaagtcaagagaaggcattcagggggaatgccaagagacaacaaaacgggcaagcaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35730 gaaaagtcaagagaaggcattcagggggaatgccaagagacaacaaaacgggcaagcaaa 35671
Query: 625 aagaagcaccgtgaaattttaagtcaaggctgtccttctgataagcaagatagcaagcca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35670 aagaagcaccgtgaaattttaagtcaaggctgtccttctgataagcaagatagcaagcca 35611
Query: 685 aacactatgttttggctgcgttgataagaagacanatgctgtcaatcacgtgataatccc 744
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 35610 aacactatgttttggctgcgttgataagaagacaaatgctgtcaatcacgtgataatccc 35551
Query: 745 tcttttttaagttttcttgggggcattcattangcgcatgtcacatgctctgnntgagaa 804
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 35550 tcttttttaagttttcttgggggcattcattaggcgcatgtcacatgctctgttgaggaa 35491
Query: 805 tgagtggaaagccacactttttatttgcgtactttcactttagctgatgaaaagaatcgt 864
||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct: 35490 tgagtggaaagccacactttttattgcggtactttcacttaggctgatgaaaagatcggt 35431
Query: 865 gtttgaaagttctgcttgagagg-tattgtgaaagtgtcaaatgataacgcacatt-acg 922
||||||| | |||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 35430 gtttgaagttcctgc-tgagaggttattgtgaaagtgtcaaatgataacgcacattaacg 35372
Query: 923 ggctgtcttttg 934
||||| ||||||
Sbjct: 35371 ggctgccttttg 35360
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6567
Number of Sequences: 1807
Number of extensions: 6567
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)