BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF08RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1115 1215 0.0
>3x_Contig1115
Length = 4702
Score = 1215 bits (613), Expect = 0.0
Identities = 744/774 (96%), Gaps = 11/774 (1%)
Strand = Plus / Plus
Query: 37 tattggacca-caaatggactggcaaagtatggaaactttaatagcaaacgagcagcgga 95
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2909 tattggaccaacaaatggactggcaaagtatggaaactttaatagcaaacgagcagcgga 2968
Query: 96 aaggcaacaagattgctcggatcattaagctgccaatggatttaccaaataataaaatta 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2969 aaggcaacaagattgctcggatcattaagctgccaatggatttaccaaataataaaatta 3028
Query: 156 ccattgaattaccaaaagatgggtacagcgaggatgattctactgaacatcatcagtcag 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 ccattgaattaccaaaagatgggtacagcgaggatgattctactgaacatcatcagtcag 3088
Query: 216 aagctgattattcatcaaacgaaagtgatgttaaccaatcagattcctctgtctcatcgg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3089 aagctgattattcatcaaacgaaagtgatgttaaccaatcagattcctctgtctcatcgg 3148
Query: 276 attattctgattctgattttgaagaactaacttcatccaaaagtaaacagcaaagtagaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 attattctgattctgattttgaagaactaacttcatccaaaagtaaacagcaaagtagaa 3208
Query: 336 gaaaatccaagataacatcagagaaacgggaaactgttctgctgacagtcgatttatctt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 gaaaatccaagataacatcagagaaacgggaaactgttctgctgacagtcgatttatctt 3268
Query: 396 tatcggcatttgcaaacgcctccagttatttcaacgccaaaaaggcgacatcagagaaac 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3269 tatcggcatttgcaaacgcctccagttatttcaacgccaaaaaggcgacatcagagaaac 3328
Query: 456 aaaaaaaagttgagaagaatgctgaaaaggctntaaaaagtatccagcaaaagatcgaat 515
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3329 aaaaaaaagttgagaagaatgctgaaaaggctttaaaaagtatccagcaaaagatcgaaa 3388
Query: 516 aagatctancaaagaagtcaaaggaatctcatgatatcttgaaaagcattagaactccat 575
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3389 aagatctacaaaagaagtcaaaggaatctcatgatatcttgaaagcaattagaactccat 3448
Query: 576 anttttttcgaaaatattactggtttatttctagcgaaagttttctcgtactgatgggtt 635
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3449 attttttcgaaaaatattactggtttatttctagcgaaagttttctcgtactgatgggta 3508
Query: 636 agagtcccgtcgaaactgatcaacttttatgc-aagtatgttaatgacgatgacatttat 694
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct: 3509 agagtcccgtcgaaactgatcaac-tttatgcaaagtatgttaatgacgatgaca-ttat 3566
Query: 695 ggtcaccaatgcatttgacgtgaaagctttggatttttgaaccctccagagaactgaaat 754
|||||||||||||||||||||||| || ||||| ||||||||||| |||| |||| ||
Sbjct: 3567 ggtcaccaatgcatttgacgtgaaggc-ttgga-ttttgaaccct-cagaagactg-aag 3622
Query: 755 tccccccaaacacacttattgcaagctgggtacttttgcaaattcctgcaagtg 808
| || |||||||||| || |||||||| |||||||||||||||| |||||||||
Sbjct: 3623 taccaccaaacacac-taatgcaagct-ggtacttttgcaaatt-ctgcaagtg 3673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7945
Number of Sequences: 1807
Number of extensions: 7945
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)