BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF09FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1592 0.0
>3x_Contig1699
Length = 18038
Score = 1592 bits (803), Expect = 0.0
Identities = 834/844 (98%), Gaps = 1/844 (0%)
Strand = Plus / Plus
Query: 86 aaagatatgtgctgattatccacaaatatatcgtgaatgtaattctcaaagatggtaggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 aaagatatgtgctgattatccacaaatatatcgtgaatgtaattctcaaagatggtaggt 2919
Query: 146 tcgtacaccttagggaaatatcccctggtgaaaacatttaaaagagaagtcttaccacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 tcgtacaccttagggaaatatcccctggtgaaaacatttaaaagagaagtcttaccacaa 2979
Query: 206 gcaccatctcctaatatgactattttacgctcaattggctgcttgcttgaagaaccacca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 gcaccatctcctaatatgactattttacgctcaattggctgcttgcttgaagaaccacca 3039
Query: 266 cagagaggcatcttgtttttggaaatccttatccaaaaattaacaacgatataaaaccag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 cagagaggcatcttgtttttggaaatccttatccaaaaattaacaacgatataaaaccag 3099
Query: 326 aaaaaagaaaatttcttggaacttccgctctttgaaccgatcagcaccacaatccctcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 aaaaaagaaaatttcttggaacttccgctctttgaaccgatcagcaccacaatccctcaa 3159
Query: 386 gcacctgaattgaacctcggttatctactagaaagttgactcgctcactaactgtactgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 gcacctgaattgaacctcggttatctactagaaagttgactcgctcactaactgtactgc 3219
Query: 446 cggtatcctgcttactattcgcggcaactatgtgtattctctatgtgttgcgggaagcgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 cggtatcctgcttactattcgcggcaactatgtgtattctctatgtgttgcgggaagcgt 3279
Query: 506 tcaggttttggatttcaaattgaaatgaattcctgttttctcatctgattatgaaacttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 tcaggttttggatttcaaattgaaatgaattcctgttttctcatctgattatgaaacttt 3339
Query: 566 aacaccgagaagaggaatgtaatatgtgctgtacgggtgttgaaatggagaataaatact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 aacaccgagaagaggaatgtaatatgtgctgtacgggtgttgaaatggagaataaatact 3399
Query: 626 tattgatgtgaaagaattgggatacattggattaacggaaggccaaacaagatctatggt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3400 tattgatgtgaaagaattgggatacattggattaacggaaggccaaacaagatctatggt 3459
Query: 686 gaatcaactattgctgacactacctggattagagcagagatttcgaatggtgttaatggg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3460 gaatcaactattgctgacactacctggattagagcagagatttcgaatggtgttaatggg 3519
Query: 746 acccaatttttatttcgtagtgtatattagatagctgtttagtccgggtaataaccttca 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3520 acccaatttttatttcgtagtgtatattagatagctgtttagtccgggtaataaccttca 3579
Query: 806 ttc-acatcgatttctttgatttcgaaatattaaggtctcgntcatgatcttaatggnag 864
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 3580 ttcaacatcgatttctttgatttcgaaatattaaggtctcgtcaatgatcttaatgggag 3639
Query: 865 aatacgtgcaagtttttgcctcatatatcgncgagtatcttataaaaaaacgacccgtcg 924
|||||||||||||||| ||||||||||||| |||||||||||| || |||||| ||||||
Sbjct: 3640 aatacgtgcaagttttggcctcatatatcgtcgagtatcttatcaagaaacgagccgtcg 3699
Query: 925 agca 928
||||
Sbjct: 3700 agca 3703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6800
Number of Sequences: 1807
Number of extensions: 6800
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)