BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1247 0.0
>3x_Contig1061
Length = 4663
Score = 1247 bits (629), Expect = 0.0
Identities = 703/720 (97%), Gaps = 7/720 (0%)
Strand = Plus / Minus
Query: 51 aacatgagaattactttttactgcgttcagaacaagaactttgaaaatactcgatgagct 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 aacatgagaattactttttactgcgttcagaacaagaactttgaaaatactcgatgagct 1027
Query: 111 catgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtctagtgaactt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 catgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtctagtgaactt 967
Query: 171 agaacctcttgactgtacagcaatgcccttggttttactaactggttttccgagtagcgg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 agaacctcttgactgtacagcaatgcccttggttttactaactggttttccgagtagcgg 907
Query: 231 taaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgattccaacga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 taaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgattccaacga 847
Query: 291 taaactgtcaaactatttctgttgtataccattcagatgaaaccttaaacatatctcacg 350
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 taaactgtcaaactatt-ctgttgtataccattcagatgaaaccttaaacatatctcacg 788
Query: 351 atgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtctgtggtga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtctgtggtga 728
Query: 411 agagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacataaaaggat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacataaaaggat 668
Query: 471 tccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttgatccaca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttgatccaca 608
Query: 531 cggtatgcccaatgagcaacttggttgaatggaatgagatagagactgatttgcataaac 590
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 607 cggtatgcccaatgagcaacttggttgaatggaatgagaaagagactgatttgcataaac 548
Query: 591 cttgggaatagcatttttttgaatgctcttattcaaaggtatgaaagaccaaaccctcaa 650
|||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 547 cttgggaa-agcaattttttgaatgctcttattcaaaggtatgaagaaccaaaccctcaa 489
Query: 651 acaa-gtgggattctccattattcactatattgacgtctcaagatgacctcagtacccta 709
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 acaaggtgggattctccattattcactatattgacgtctcaagatgacatcagtacccta 429
Query: 710 -acacaaattttattaag--catatttccaaccgtgttcaaaccggc-acgaatgataga 765
||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 428 tacacagatattagtaaggcaatattcccaaccgtgttcaaaccggcaacgaatgataga 369
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6650
Number of Sequences: 1807
Number of extensions: 6650
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)