BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF11FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig870 1447 0.0
>3x_Contig870
Length = 2443
Score = 1447 bits (730), Expect = 0.0
Identities = 842/868 (97%), Gaps = 10/868 (1%)
Strand = Plus / Minus
Query: 93 tcttcagacggctcatctacaaggattttctcccataatctcataccaatcaggtcagac 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 tcttcagacggctcatctacaaggattttctcccataatctcataccaatcaggtcagac 2384
Query: 153 tcatgcgtaatgccaccattggaggtgtgctcgtctagtcttattgttgctaataactgg 212
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 tcatgcgtaatgccaccatgggaggtgtgctcgtctagtcttattgttgctaataactgg 2324
Query: 213 aaatccgtggcagctttgatgacttcacctctagatggaatggatatttctcttttttca 272
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 aaaccgttggcagctttgatgacttcacctctagatggaatggatatttctcttttttca 2264
Query: 273 agaa--gggta-agaagaaca-gacaa-gacttcggttggcgctttgttgatatcctcga 327
||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2263 agacacgggtacagaagaacacgacaacgacttcggttggcgctttgttgatatcctcga 2204
Query: 328 taagtacccatcgtccctctttaactgctgttgtgagaacaccggatctccattcaaaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 taagtacccatcgtccctctttaactgctgttgtgagaacaccggatctccattcaaaag 2144
Query: 388 aaccgggtttttcacctgatgtatatgtacccaaaagtagtttagcatcagtttgttcac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 aaccgggtttttcacctgatgtatatgtacccaaaagtagtttagcatcagtttgttcac 2084
Query: 448 ctaaatgaattttgacaacagaactatcgcagttcattttttttgaaagctcattgatca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 ctaaatgaattttgacaacagaactatcgcagttcattttttttgaaagctcattgatca 2024
Query: 508 aaaatgttttacctgatccagccttacccacaagcattacaggcttgttgcgctgaatac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 aaaatgttttacctgatccagccttacccacaagcattacaggcttgttgcgctgaatac 1964
Query: 568 cttcggccaatttttgtaaggccaacttggcaccatccgtatatactagatctgacttta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 cttcggccaatttttgtaaggccaacttggcaccatccgtatatactagatctgacttta 1904
Query: 628 gatgttcttcattagaaggtgcttcggagattctggcaataaatacaccacatacttcaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 gatgttcttcattagaaggtgcttcggagattctggcaataaatacaccacatacttcaa 1844
Query: 688 caatcaacgacgaaagttcattgatatcgatgttgaacgattttccagttggtctgaagt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 caatcaacgacgaaagttcattgatatcgatgttgaacgattttccagttggtctgaagt 1784
Query: 748 tctttggat-agaaacaagttcattgatttcatttggtagactatggtaaattgagaagc 806
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 1783 tctttggataagaaacaagttcattgatttcatttggtagactatggtaatttgagagcc 1724
Query: 807 ttttagcttcagtaag-tccaaaaattgataatctacatcgnaaagccccttc-aataca 864
|||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 1723 ttttagcttcagtaagttccaaaaattgataatctacatcgg-aagcaccttcaaataca 1665
Query: 865 cttaagatagtttcagttgacatttaaagttgattttggaccacaagtt-acagccgtgc 923
|||||||||| ||||||||||| || ||||||||||||||||||||||| |||| |||||
Sbjct: 1664 cttaagataggttcagttgacagtttaagttgattttggaccacaagttcacaggcgtgc 1605
Query: 924 tctgccattttcataagcatattaagaa 951
|||||||||| ||||||||||||||||
Sbjct: 1604 tctgccatttcaataagcatattaagaa 1577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7583
Number of Sequences: 1807
Number of extensions: 7583
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)