BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF11RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 868 0.0
>3x_Contig1712
Length = 23668
Score = 868 bits (438), Expect = 0.0
Identities = 468/474 (98%), Gaps = 3/474 (0%)
Strand = Plus / Plus
Query: 48 tgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgatgatc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11492 tgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgatgatc 11551
Query: 108 aaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaacaacgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11552 aaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaacaacgg 11611
Query: 168 tcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgggtat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11612 tcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgggtat 11671
Query: 228 tcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaacaagta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11672 tcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaacaagta 11731
Query: 288 gatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagccaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11732 gatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagccaat 11791
Query: 348 tgcggtgaacctggagaagtgttttccataacgagagctgttttcttcttcagagaagtc 407
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11792 tgcggtgaacctggagaagtgttttccataacg-gagctgttttcttcttcagagaagtc 11850
Query: 408 aataccgtgaccacctctttgtagttgacggtagtacatgatagcggccttgaatgccaa 467
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11851 aataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgccaa 11910
Query: 468 ttcattggcatccggccccagaaagacccgaccaaaattttattttgacccttt 521
||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 11911 ttcattggcat-cggcaccagaaagaccggacc-aaattttattttgacccttt 11962
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8613
Number of Sequences: 1807
Number of extensions: 8613
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)