BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZF12FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1084 0.0
>3x_Contig1780
Length = 27883
Score = 1084 bits (547), Expect = 0.0
Identities = 708/759 (93%), Gaps = 5/759 (0%)
Strand = Plus / Minus
Query: 89 aagaaagccagattaatttttaggttgaacagaaggttcttgctgattttgattctgagg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aagaaagccagattaatttttaggttgaacagaaggttcttgctgattttgattctgagg 880
Query: 149 ttgaacctgctgagtcgaagaatgtcttctccgaaaaacggtgccataggaaacatgaat 208
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 879 ttgaacctgctgagtcgaagaaggca--caccgaaaaacggtgccataggaaacatgaat 822
Query: 209 ggcatgaaattaacat-aggttgaggcatgacttttggctttttgacacctgtttcagca 267
||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggcatgaaaggaactggaggaggaggcatgacttttggctttttgacacctgtttcagca 762
Query: 268 acaggtgcagcaccagcgacaggttcttcttctaacaatcttttcttattttgctttatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acaggtgcagcaccagcgacaggttcttcttctaacaatcttttcttattttgctttatg 702
Query: 328 aattcctgaacttttctttgtatctcctgtactggttccaatgaatctaataagatatcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aattcctgaacttttctttgtatctcctgtactggttccaatgaatctaataagatatcc 642
Query: 388 gatgtttgacaaagaggacaaacgaaatctgattctagtagtgcatcctccatagctagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gatgtttgacaaagaggacaaacgaaatctgattctagtagtgcatcctccatagctagt 582
Query: 448 cgtgaaacgacttttccacaacatttagtacattttacaggatctcgnagcaatccacca 507
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 581 cgtgaaacgacttttccacaacatttagtacattttacaggatctcgtagcaatccacca 522
Query: 508 gntaaacaacatnncaactcatccggcaagtctggaaactgtcccttcatatacaattta 567
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttaaacaacatttcaactcatccggcaagtctggaaactgtcccttcatatacaattta 462
Query: 568 tcctcttgagacatcatataactctgctgttgttgnncacaatgataatcttcccactat 627
||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 461 tcctcttgagacatcatataactctgctgttgttgtcttctttgataatcttcccacgaa 402
Query: 628 tttngagctgccatatggactacgaaaccccctccatcagtgaccataatcttcttctca 687
|| || ||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 401 gtttgatctgccatatggactacgaatttcccttcatcagtgaccataatcttcttctca 342
Query: 688 gccatctcctccggagtcatcgaagaaggattcatctctatgcttttcaaaaacttctta 747
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 341 gccatctcctccggagtcatcgaagatggatctatctctatgcttttcaaaaacttctta 282
Query: 748 agaatcgcggaggtacgcttaattctcttaaccctcgaatttatgattattgttgggtag 807
|||| ||| ||||| ||||||||||| ||||||||| ||| |||||||||||| |
Sbjct: 281 ggaataccggtagtacgtttaattctctt-accctcgaaattaggattattgttggtagg 223
Query: 808 gttattttttatccaatgacctctacca-cacatctgta 845
| |||||| |||||||||||||||||| ||||||||||
Sbjct: 222 gcaatttttaatccaatgacctctaccaccacatctgta 184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6195
Number of Sequences: 1807
Number of extensions: 6195
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)