BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG01FM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig545 1449 0.0
>3x_Contig545
Length = 2011
Score = 1449 bits (731), Expect = 0.0
Identities = 781/790 (98%), Gaps = 6/790 (0%)
Strand = Plus / Plus
Query: 86 ctcatttgaagaagcatggtaaagctactaagatcacatgttctatatttgatagacccg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctcatttgaagaagcatggtaaagctactaagatcacatgttctatatttgatagacccg 182
Query: 146 atgtgaagttggacagttggaaattcaatgaatgggactatggcaaatctaaaagagtgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atgtgaagttggacagttggaaattcaatgaatgggactatggcaaatctaaaagagtgt 242
Query: 206 taccttgtagtgccagaggtttatttatccaaaatgctgattcagagcccaggatagtta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taccttgtagtgccagaggtttatttatccaaaatgctgattcagagcccaggatagtta 302
Query: 266 ctagaggatacgataagttctttaacatcgacgaagtgcaaagaactagctggaggtcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctagaggatacgataagttctttaacatcgacgaagtgcaaagaactagctggaggtcaa 362
Query: 326 ttcaagataacactgaggggccatatgagattactgtcaaagagaacggatgtataattt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttcaagataacactgaggggccatatgagattactgtcaaagagaacggatgtataattt 422
Query: 386 tgattggaggattggaagatggtactgttgtagtatgttcgaaacatagcactgggccca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgattggaggattggaagatggtactgttgtagtatgttcgaaacatagcactgggccca 482
Query: 446 gagatgacatcaacagaaaccattcacaagctggtcagcagttcttggaacaacaattga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagatgacatcaacagaaaccattcacaagctggtcagcagttcttggaacaacaattga 542
Query: 506 aggagaaaaaccttggattgaaggatcttggacggtatttatatgaagccaattgtactg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aggagaaaaaccttggattgaaggatcttggacggtatttatatgaagccaattgtactg 602
Query: 566 ctattgcagaatattgcgatgatacctttgaagaacatattttggaatataacagagaca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctattgcagaatattgcgatgatacctttgaagaacatattttggaatataacagagaca 662
Query: 626 atgcaggtctatacctacatggtttaaactacaatactgtagggttcagcacttttccaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atgcaggtctatacctacatggtttaaactacaatactgtagggttcagcacttttccaa 722
Query: 686 tggcaaaagtagctgaatttgcaaacgcatgggngatttaagcatattgattactttact 745
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 723 tggcaaaagtagctgaatttgcaaacgcatggg-gatttaagcatattgattactttact 781
Query: 746 acggaagatagttcagtca-tgaagacattccttactgagtgcgaaaaagctgttcatta 804
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 782 acggaagatagttca-tcattgaagacattccttactgagtgcgaaaaagctggtcatta 840
Query: 805 caataatcaagagattgaaagggtttgtgataagaatgt-aggataattcaactgntggg 863
||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||| ||||
Sbjct: 841 caataatcaagagattg-aagggtttgtgataag-atgtaaggataaatcaactggtggg 898
Query: 864 acattctttt 873
||||||||||
Sbjct: 899 acattctttt 908
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6095
Number of Sequences: 1807
Number of extensions: 6095
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)