BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG01RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1393 1332 0.0
>3x_Contig1393
Length = 6980
Score = 1332 bits (672), Expect = 0.0
Identities = 808/836 (96%), Gaps = 13/836 (1%)
Strand = Plus / Minus
Query: 62 cgcatatcatgtctttaacaacaaaggaaaacactaggttaaatgcgcaactttctcacg 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6330 cgcatatc-tgtctttaacaacaaaggaaaacactaggttaaatgcgcaactttctcacg 6272
Query: 122 aaagtttgagagaaaccgccagcaaacaacaagcacaaaatcaataccgaagacagcaac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6271 aaagtttgagagaaaccgccagcaaacaacaagcacaaaatcaataccgaagacagcaac 6212
Query: 182 agcaaaaccagcagcctctagctcctaagagaaattctcaaagaccgcaatcaatgatgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6211 agcaaaaccagcagcctctagctcctaagagaaattctcaaagaccgcaatcaatgatgg 6152
Query: 242 ctcaaagagttaatggtgatagacgttctttcatgcagaataattccggtgttgcttccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6151 ctcaaagagttaatggtgatagacgttctttcatgcagaataattccggtgttgcttccc 6092
Query: 302 ctcgcgatgctagacctagaagtgtcgtagggaagccgtccaacaatgccaaatcgcaac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6091 ctcgcgatgctagacctagaagtgtcgtagggaagccgtccaacaatgccaaatcgcaac 6032
Query: 362 aaaatagtggactttacccaagggaacctcctcaaaagcgttcaagcttcgaaaagcaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031 aaaatagtggactttacccaagggaacctcctcaaaagcgttcaagcttcgaaaagcaaa 5972
Query: 422 gaccgatgtccaccaaccttggatttaaaaacttatcgttgagagaggatccgcaactca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5971 gaccgatgtccaccaaccttggatttaaaaacttatcgttgagagaggatccgcaactca 5912
Query: 482 ctgaccagtacgagcagcctcaagccccattccaaccacatccacaacaaagacaatcta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5911 ctgaccagtacgagcagcctcaagccccattccaaccacatccacaacaaagacaatcta 5852
Query: 542 gaaactcaacccctgttaaaagtggagtaacgtacaatggtgtacagtatgtctccggat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5851 gaaactcaacccctgttaaaagtggagtaacgtacaatggtgtacagtatgtctccggat 5792
Query: 602 cagtaccactgcctgctttc-ataccaacaat-acaaacc-aaagcggcgtcaattgctc 658
|||||||||||||||||| | ||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 5791 cagtaccactgcctgcttccaataccaacaataacaaaccaaaagcgtcgtcaattgctc 5732
Query: 659 atggattcaaat-aaga-ttgccgactctgattc-gacgaagaatccg-aaacctacagt 714
|||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 5731 atggattcaaatcaagatttgccgactctgattcggacgaagaatccgcaaacctacagt 5672
Query: 715 tcagc-accaagggagtcgatctactcaag-ttcaagc-aatatggaaccgg-accttct 770
||||| |||||||||||||||||||||||| ||||||| ||||| ||||||| |||| ||
Sbjct: 5671 tcagcaaccaagggagtcgatctactcaagtttcaagcgaatat-gaaccggcacctcct 5613
Query: 771 gcacccgggccatacaatcctaatgctactttgagaccccagccagagccccaaaataac 830
|||||| ||||||||||||| |||||||||||||||| ||||||||||| |||| |||
Sbjct: 5612 ccacccgcgccatacaatcctcatgctactttgagacctcagccagagcctcaaataaac 5553
Query: 831 gccacttacactactgagaaaaaaaagaagaacaacttccgcagtaaacttaagaa 886
|| ||| ||||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct: 5552 gcaactcacactactgagaagaaaaagaagaacaacttcagcagtaaactaaagaa 5497
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6144
Number of Sequences: 1807
Number of extensions: 6144
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)