BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG02RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1151 1255 0.0
>3x_Contig1151
Length = 5859
Score = 1255 bits (633), Expect = 0.0
Identities = 745/771 (96%), Gaps = 10/771 (1%)
Strand = Plus / Minus
Query: 47 ataacaattggatatccaaatgttcaaaccaacaataatcttatccgcataataatagaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 ataacaattggatatccaaatgttcaaaccaacaataatcttatccgcataataatagaa 908
Query: 107 aaaacaccatattgaggcctgctgaccccagattttaccatgttgcgtcaagggatactt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 aaaacaccatattgaggcctgctgaccccagattttaccatgttgcgtcaagggatactt 848
Query: 167 ggtatacgaagatacaacactttcagattacagtcgctttctgtggcaaggaaacggcct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ggtatacgaagatacaacactttcagattacagtcgctttctgtggcaaggaaacggcct 788
Query: 227 gctgtacatactcatcatgaagttgatcatgaatcatcggatacacataaagcacaggaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gctgtacatactcatcatgaagttgatcatgaatcatcggatacacataaagcacaggaa 728
Query: 287 gaactagatagcatctggaatggtctttcaagaatgatatacactcggaatttaacgatg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaactagatagcatctggaatggtctttcaagaatgatatacactcggaatttaacgatg 668
Query: 347 tataattgtttcgttttgtttcagtattgtgggaaatcggctgatggttcattagacgaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tataattgtttcgttttgtttcagtattgtgggaaatcggctgatggttcattagacgaa 608
Query: 407 agtgatgtctccagattgtaccatacgttacggaggaattacaggacaagcaatgtgata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agtgatgtctccagattgtaccatacgttacggaggaattacaggacaagcaatgtgata 548
Query: 467 tatacgggtagttttaaccaatcggtattcaacaattgttttaaggacgccatattaccg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatacgggtagttttaaccaatcggtattcaacaattgttttaaggacgccatattaccg 488
Query: 527 gaaaataccaatgattccttactcctgtcccagtttctgcatgtacagcaacccttctgt 586
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 487 gaaaataccaatgattccttactcctgtcccagtttctgcaggtacagcaaccc-tctgt 429
Query: 587 tatttcaaagataatgtcnatagcagagaatcgtcattatacaccttcagttgtaagagt 646
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 428 tatttcaaagataatgtcaatagcagagaagcgtcattatacaccttcagttgtaggagt 369
Query: 647 taaagtatctcaaaa-tcatctttaatcccattgaaaaaattgaagccttttttacaaga 705
||| ||||||||||| |||||| |||||||||||||| ||||||||||| ||||||| ||
Sbjct: 368 taaggtatctcaaaagtcatctctaatcccattgaaagaattgaagcctcttttacagga 309
Query: 706 attttttactatgtattgaggatttcacttatgaaaaccttgatgaaaataagtggctgc 765
||| | ||||||||| |||||||||||||||||| || ||||||||| || || |||||
Sbjct: 308 attctctactatgta-tgaggatttcacttatgataa-cttgatgaagat-agctgctgc 252
Query: 766 ttgcaaacaccaagactaattcatggaaaggccttcgttaccttattaaag 816
| ||||||| ||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 251 tagcaaaca-caagactaa-tcatggaaag--cttcgtta-cttattaaag 206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6936
Number of Sequences: 1807
Number of extensions: 6936
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)