BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG03FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig202 1039 0.0
3x_Contig1321 295 8e-80
>3x_Contig202
Length = 1756
Score = 1039 bits (524), Expect = 0.0
Identities = 546/553 (98%), Gaps = 1/553 (0%)
Strand = Plus / Plus
Query: 318 gcaattctattgttttttagattgagagtccgtaggtttgccatacctgacaaatcggga 377
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gcaattctattgtcttttagattgagagtccgtaggtt-gccatacctgacaaatcggga 59
Query: 378 acagcttgaattttattgttggataggttcatcttcgccaacttacttagttcgttgatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 acagcttgaattttattgttggataggttcatcttcgccaacttacttagttcgttgatg 119
Query: 438 gaaagtggaagtgaatttatcttattgtatgaaagatcaacctgtaataagtttgtacac 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaaagtggaagtgaatttatcttattgtatgaaagatcaacctgtaataagtttgtacac 179
Query: 498 ctattgataacttcggggtacgccgtaaatgcattggaggagatatccaacaactgcaag 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctattgataacttcggggtacgccgtaaatgcattggaggagatatccaacaactgcaag 239
Query: 558 ttcttgagattcttaaatccagatggaagtctgtctaactggttacattgaaggttcaaa 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttcttgagattcttaaatccagatggaagtctgtctaactggttacattgaaggttcaaa 299
Query: 618 atagtaagattggacaacttggagatggattccggtacccttttgataaagtttctctct 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atagtaagattggacaacttggagatggattccggtacccttttgataaagtttctctct 359
Query: 678 aggtccaaggaaactaaatcataagcctgtgtaatgttggctgggaacctagatgccctg 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggtccaaggaaactaaatcataagcctgtgtaatgttggctgggaacctagatgccctg 419
Query: 738 acattaaccattctcaaactggatagcttaacggcactntcaatgaaatcgataggtaaa 797
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 420 acattaaccattctcaaactggatagcttaacggcactttcaatgaaatcgataggtaaa 479
Query: 798 aagatttnagcgttattaggaacatccaaactctcgatttcagaagtatgctgatanaaa 857
||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 480 aagatattagcgttattagaaacatccaaactctcgatttcagaagtatgctgataaaaa 539
Query: 858 atgataggaggtg 870
|||||||||||||
Sbjct: 540 atgataggaggtg 552
>3x_Contig1321
Length = 8217
Score = 295 bits (149), Expect = 8e-80
Identities = 159/161 (98%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 86 ctcaagcttttctaaagttttcaaaaaatcgataggtaaactggatagttttgccttgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669 ctcaagcttttctaaagttttcaaaaaatcgataggtaaactggatagttttgccttgtt 7728
Query: 146 tagagataaacttgtaaggttagataacacattacctctatagtcgaacgaagtaacagg 205
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7729 tagagataaacttgtaaggttagataacacattacctctatagtcgaacg-agtaacagg 7787
Query: 206 attttctgtcatatcgcagcttcttagtttaggtagtgaat 246
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7788 attttctgtcaaatcgcagcttcttagtttaggtagtgaat 7828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5853
Number of Sequences: 1807
Number of extensions: 5853
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)