BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG03RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1400 0.0
>3x_Contig1665
Length = 15710
Score = 1400 bits (706), Expect = 0.0
Identities = 779/801 (97%), Gaps = 3/801 (0%)
Strand = Plus / Minus
Query: 47 tgggattactgtaacctttctgctgagcagccagttgaattttcaaaccatgctcgtcta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2813 tgggattactgtaacctttctgctgagcagccagttgaattttcaaaccatgctcgtcta 2754
Query: 107 caccggtcgtgaagcaagtatcctggccggcaagtttcttccatctattttgcacatcac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 caccggtcgtgaagcaagtatcctggccggcaagtttcttccatctattttgcacatcac 2694
Query: 167 acagtagactgctgtaaaggtgccctaaatgaggttttgcattgggataaaatattggag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2693 acagtagactgctgtaaaggtgccctaaatgaggttttgcattgggataaaatattggag 2634
Query: 227 tggtaatgtgaaatttcgataccgctcgtaccgctttagaagtcatacttggcaagtgaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2633 tggtaatgtgaaatttcgataccgctcgtaccgctttagaagtcatacttggcaagtgaa 2574
Query: 287 agagttgctagttgttgatttcgttctgcagtgtttattcttgtttgtcttttctcataa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2573 agagttgctagttgttgatttcgttctgcagtgtttattcttgtttgtcttttctcataa 2514
Query: 347 tgttcggtataaagatattttcagaggttttgttaaactaaaagtcagttttcctacgtt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 tgttcggtataaagatattttcagaggttttgttaaactaaaagtcagttttcctacgtt 2454
Query: 407 agatattcgatcaagaaccttcacttaaattagaaaatgtgaacggttatggaggcatat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 agatattcgatcaagaaccttcacttaaattagaaaatgtgaacggttatggaggcatat 2394
Query: 467 atacttatttgattatgctaatacatccataaattagtacccatttgctggaatatctcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 atacttatttgattatgctaatacatccataaattagtacccatttgctggaatatctcc 2334
Query: 527 caacaaaagtgttaaatataattatttagtgaacaaactgacaacgtnctcatcttggat 586
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2333 caacaaaagtgttaaatataattatttagtgaacaaactgacaacgtcctcatcttggat 2274
Query: 587 tttatgatttagcccacatttctgtggggaatgcttatccgatg-accccatactaaggc 645
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 2273 tttatgatttagcccacatttctgtggggaatgcttagccgatgaaccccatactaaggc 2214
Query: 646 gtacttgaatttatcttt-aaatctctnggaatattgtggcaaagatcacctatggagct 704
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 2213 gtacttgaatttatctttaaaatctctgtgaatattgtggcaaagatcacctatggagct 2154
Query: 705 gttactnctaac-acccatgggtctgaggaatctggctttataccacgcttctttgtatt 763
|||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2153 gttactcctaacaaccaatgggtctgagaaatctggctttataccacgcttctttgtata 2094
Query: 764 tacacgnntcaaaattaatggataccagatttcatttaccacggcatccaatccttagat 823
|||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 2093 tacacggttcaaatttaattgataccagatttcatctaccacgtcatccaatcctaagtc 2034
Query: 824 attcccacatgacatgaccac 844
|| | ||||||||||||||||
Sbjct: 2033 atcctcacatgacatgaccac 2013
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6161
Number of Sequences: 1807
Number of extensions: 6161
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)