BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG04FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig911 1532 0.0
>3x_Contig911
Length = 4722
Score = 1532 bits (773), Expect = 0.0
Identities = 804/814 (98%), Gaps = 1/814 (0%)
Strand = Plus / Minus
Query: 83 tattctcgttttccttcaggattctgttcacgtaagttaatgcactggacatcgctccac 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 tattctcgttttccttcaggattctgttcacgtaagttaatgcactggacatcgctccac 1073
Query: 143 ttaaactactcttcatcgaaaccttactctcttgaccttctaattcttccttgaacaacc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ttaaactactcttcatcgaaaccttactctcttgaccttctaattcttccttgaacaacc 1013
Query: 203 tataccattgctccaccactatctcatccacattacggaaccctctatacatgtcagaac 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tataccattgctccaccactatctcatccacattacggaaccctctatacatgtcagaac 953
Query: 263 ttaccatagacatactaggtttcgaatcagccgatggatacaaatatttcataccctcgg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttaccatagacatactaggtttcgaatcagccgatggatacaaatatttcataccctcgg 893
Query: 323 agtgtgcagcaatgaggcacacctggtttcctgaattgaaagccaaatgcgcattcaaaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 agtgtgcagcaatgaggcacacctggtttcctgaattgaaagccaaatgcgcattcaaaa 833
Query: 383 acactacgatggacttcaacgcctctataagttgcttctcaccagaacttccttccgaac 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 acactacgatggacttcaacgcctctataagttgcttctcaccagaacttccttccgaac 773
Query: 443 cactaccagattgttgtttcgtaagctggacccatgaatgaatgctggtatcaaccacaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cactaccagattgttgtttcgtaagctggacccatgaatgaatgctggtatcaaccacaa 713
Query: 503 cagtgagaagagaaggcgtatcctctatttcttgagtcttcgatttggttccttggaaca 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cagtgagaagagaaggcgtatcctctatttcttgagtcttcgatttggttccttggaaca 653
Query: 563 ctgtatcagcgatggcatccattttaaccgcttcctctttcaaagaaaaggctattaata 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctgtatcagcgatggcatccattttaaccgcttcctctttcaaagaaaaggctattaata 593
Query: 623 ataaaaacctgatttcacaaagttgtattcgatcctttatggtatatgaagcgttttaat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ataaaaacctgatttcacaaagttgtattcgatcctttatggtatatgaagcgttttaat 533
Query: 683 ttaatctatgggtctagctntactctacgatttgatcttcctttaagatcagcttcaact 742
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttaatctatgggtctagctttactctacgatttgatcttcctttaagatcagcttcaact 473
Query: 743 ctaaatgtgcctttcccaaattcatgttacttgaaatttctggccgnccgnaaacatttg 802
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct: 472 ctaaatgtgcctttcccaaattcatgttacttgaaatttctggccgcccgaaaacattgg 413
Query: 803 ccccaaaa-gtagcagctttaactcgaaaaaaataatgaacaaagaatcgacaccagcaa 861
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 412 ccccaaaatgtagcagctttaactcgaaaaaaataatgaacaagacatcgacacaagcaa 353
Query: 862 agaacgaaccgctgagaatcatcttgtgttactg 895
||||||||||||||||| ||||||||||||||||
Sbjct: 352 agaacgaaccgctgagagtcatcttgtgttactg 319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6218
Number of Sequences: 1807
Number of extensions: 6218
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)