BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 1235 0.0
>3x_Contig1715
Length = 16241
Score = 1235 bits (623), Expect = 0.0
Identities = 705/727 (96%), Gaps = 4/727 (0%)
Strand = Plus / Minus
Query: 48 catcaagaacgttgccgccgccgccgggacaacaaaatggctcgttgccccagcatacag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 catcaagaacgttgccgccgccgccgggacaacaaaatggctcgttgccccagcatacag 4278
Query: 108 aggaagaaccagcctccaatagttcagaaagtgcaccacctgccatgagaatgttacccc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 aggaagaaccagcctccaatagttcagaaagtgcaccacctgccatgagaatgttacccc 4218
Query: 168 tagcagatttacctcctcctccacagaggactgattctcataccaccacatccgagcaac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 tagcagatttacctcctcctccacagaggactgattctcataccaccacatccgagcaac 4158
Query: 228 cggcagttccaagtagaacttttgatccacctccaagatattccactaatgaaactattc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157 cggcagttccaagtagaacttttgatccacctccaagatattccactaatgaaactattc 4098
Query: 288 ctccaacttataatattgatgaagacattcaaacggcacataagaaaccgcctccaaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 ctccaacttataatattgatgaagacattcaaacggcacataagaaaccgcctccaaaag 4038
Query: 348 tgccaaaaaagaaggtatcattaagggcaggaaataaaccacctgtccccaagaaaaagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 tgccaaaaaagaaggtatcattaagggcaggaaataaaccacctgtccccaagaaaaagg 3978
Query: 408 ctagtttgtccggtacagccactcatgaacataacgagtcagcccgcacatcgttaacgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 ctagtttgtccggtacagccactcatgaacataacgagtcagcccgcacatcgttaacgc 3918
Query: 468 aagatactaataacagtattgatgatgacgatgatgacgattctggagaaggtaattctt 527
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3917 aagaaactaataacagtattgatgatgacgatgatgacgattctggagaaggtaattctt 3858
Query: 528 tcagggagtatttgaggcatgtagttcctgcagatagggatcatattcataagtccaaat 587
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3857 tcaggaagtatttgaggcatgtagttcctgcagaaagggatcatattcataagtccaaat 3798
Query: 588 aactttaaacacattagtggcatttactcgcatcgc-aaaaaaaataaagagtttt-taa 645
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 3797 aactttaaacacattagtggcatttactcgcatcgcaaaaaaaaataaagagttttataa 3738
Query: 646 acagtcatacaccgagacagcttacttacaactgaagtcccttaaagggctc-aaaacgc 704
||||||||||||||||||||| ||||||| ||||||||||| | |||||||| |||||||
Sbjct: 3737 acagtcatacaccgagacagcatacttaccactgaagtcccgttaagggctcaaaaacgc 3678
Query: 705 gggttgcaattttttaattttttattgattgggacctaaggaacacgctttatcattatt 764
|| | |||| | ||||| ||||| ||| |||| |||| |||||||| |||||||||||
Sbjct: 3677 ggctgcaaattatataattatttatagataggga-ctaaagaacacgcattatcattatt 3619
Query: 765 cttttta 771
|||||||
Sbjct: 3618 cttttta 3612
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8335
Number of Sequences: 1807
Number of extensions: 8335
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)