BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG05FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1203 0.0
>3x_Contig1142
Length = 5741
Score = 1203 bits (607), Expect = 0.0
Identities = 640/650 (98%), Gaps = 2/650 (0%)
Strand = Plus / Minus
Query: 86 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 591
Query: 146 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 531
Query: 206 atcatctttctttttgacacctttataccttagaaattcatgttgaggctcaaactctga 265
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 471
Query: 266 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 411
Query: 326 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 351
Query: 386 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 291
Query: 446 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 231
Query: 506 cctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataag 171
Query: 566 gtatgcttttgccaatacctctttatttcatgatttatagtcagatttcatttttaagct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtatgcttttgccaatacctctttatttcatgatttatagtcagatttcatttttaagct 111
Query: 626 ttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagttaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagttaca 51
Query: 686 tggacaattacattgacaaaaagttgtt--cgtatggcttaatgtgtaaa 733
||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct: 50 tggacaattacattgacaaaagtttgtttctgtatcgcttaatgtgtaaa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,318
Number of Sequences: 1807
Number of extensions: 11318
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)