BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG05RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1360 0.0
>3x_Contig1708
Length = 19451
Score = 1360 bits (686), Expect = 0.0
Identities = 772/790 (97%), Gaps = 8/790 (1%)
Strand = Plus / Plus
Query: 49 aggctgttaacgcggaagaacagcagtatttggatttatgtgaaaggattatcaatgagg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 aggctgttaacgcggaagaacagcagtatttggatttatgtgaaaggattatcaatgagg 4636
Query: 109 gagaattcagaccagatagaactggtacagggacttattccctttttgcgcctccacagt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 gagaattcagaccagatagaactggtacagggacttattccctttttgcgcctccacagt 4696
Query: 169 tacggtttaatttgagcaatgatactttcccgcttctcactacgaagagagtgtttacga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 tacggtttaatttgagcaatgatactttcccgcttctcactacgaagagagtgtttacga 4756
Query: 229 aaggtattattttggagctcttatggtttgttgctggatgtacagacgggaagaaattat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4757 aaggtattattttggagctcttatggtttgttgctggatgtacagacgggaagaaattat 4816
Query: 289 cagaacaaggcgttaagatatgggaaggtaacggttctcgtgagtacctggactcacttg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4817 cagaacaaggcgttaagatatgggaaggtaacggttctcgtgagtacctggactcacttg 4876
Query: 349 ggttgactgacagaagagagggggatttaggaccagtttacgggttccaatggagacatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4877 ggttgactgacagaagagagggggatttaggaccagtttacgggttccaatggagacatt 4936
Query: 409 ttggggccgaatataagacatgtgatgatgattatagtggtcaaggtgttgatcagttga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4937 ttggggccgaatataagacatgtgatgatgattatagtggtcaaggtgttgatcagttga 4996
Query: 469 aggagattattcataagttgaagacaaatccatacgacagaagaataattctttctgcat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4997 aggagattattcataagttgaagacaaatccatacgacagaagaataattctttctgcat 5056
Query: 529 ggaaccctccggatttcccc-agatggctttaccgccatgccatgttttctcgc-atttt 586
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 5057 ggaaccctccggatttccccaagatggctttaccgccatgccatgttttctcgcaatttt 5116
Query: 587 acgtcagttttcccaa-ggagtaagtgcc-aaccaagattgtcatgtgtactttatcaga 644
|||||||||| ||||| |||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 5117 acgtcagtttccccaagggagaaggtgccaaaccaagattgtcatgtgtactttatcaga 5176
Query: 645 gatcatgtgatatgggtctaggagtacccttt-acatcgcgtcgtatgcgctactgacga 703
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5177 gatcatgtgatatgggtctaggagtaccctttaacatcgcgtcgtatgcgctactgacga 5236
Query: 704 agatgattgctatggtctgtgatttggaaactggtgaaattatt-acactttgggtgatg 762
||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct: 5237 agatgattgctatggtctgtgatatggaacctggtgaatttattcacactttgggtgatg 5296
Query: 763 cgcatgtttataaagatc-tgttgatgcattaaggac-caaattggccgaaagccaagac 820
|||||||||||||||||| |||||||||||||||||| ||||||| | || ||||||||
Sbjct: 5297 cgcatgtttataaagatcatgttgatgcattaaggacacaaattgccagagagccaagag 5356
Query: 821 ctttcccaaa 830
||||||||||
Sbjct: 5357 ctttcccaaa 5366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5749
Number of Sequences: 1807
Number of extensions: 5749
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)