BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZG07RM1.SCF screened BAC_end
         (957 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1666                                                         934   0.0  

>3x_Contig1666 
          Length = 16162

 Score =  934 bits (471), Expect = 0.0
 Identities = 562/583 (96%), Gaps = 7/583 (1%)
 Strand = Plus / Plus

                                                                         
Query: 38    aagcttgatatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctt 97
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12641 aagcttgatatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctt 12700

                                                                         
Query: 98    tttgagttttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtgg 157
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12701 tttgagttttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtgg 12760

                                                                         
Query: 158   aaacgttaaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaataga 217
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12761 aaacgttaaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaataga 12820

                                                                         
Query: 218   attttgttgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaa 277
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12821 attttgttgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaa 12880

                                                                         
Query: 278   gatctttttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaaga 337
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12881 gatctttttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaaga 12940

                                                                         
Query: 338   tctgtcatttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaa 397
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12941 tctgtcatttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaa 13000

                                                                         
Query: 398   atcatcattttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacga 457
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13001 atcatcattttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacga 13060

                                                                         
Query: 458   gtttatcaacgaattgaatgcttcaattctgcttac-aaattagaagttttggtttacag 516
             ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 13061 gtttatcaacgaattgagtgcttcaattctgcttacaaaattagaggttttgg-ttacag 13119

                                                                         
Query: 517   gttttttgagatt-atattgggggagattttt-cattttccaacc-ctttggaaaattta 573
             |||| | |||||| ||||| |||||||||||| || | ||||||| ||||| || |||||
Sbjct: 13120 gtttctcgagattcatatt-ggggagatttttccaatatccaaccactttgtaatattta 13178

                                                        
Query: 574   ttaaaaag-attttgggcttttttatgacaacttcagggtttt 615
             || || || |||||||  | || ||||||||||||||||||||
Sbjct: 13179 ttcaatagtattttggcttcttctatgacaacttcagggtttt 13221


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,135
Number of Sequences: 1807
Number of extensions: 12135
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)