BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG08FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1477 0.0
>3x_Contig1697
Length = 16220
Score = 1477 bits (745), Expect = 0.0
Identities = 828/847 (97%), Gaps = 7/847 (0%)
Strand = Plus / Plus
Query: 85 caccggaaaagatcagagttccttctgtcctgcagtcactacgtatttcatacggacatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10474 caccggaaaagatcagagttccttctgtcctgcagtcactacgtatttcatacggacatg 10533
Query: 145 aagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacccaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10534 aagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacccaa 10593
Query: 205 ttccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagttactg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10594 ttccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagttactg 10653
Query: 265 ctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacatctc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10654 ctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacatctc 10713
Query: 325 ttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaaaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10714 ttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaaaaa 10773
Query: 385 cacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgttaaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10774 cacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgttaaga 10833
Query: 445 agttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgcagta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10834 agttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgcagta 10893
Query: 505 tcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctactaca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10894 tcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctactaca 10953
Query: 565 ggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccattct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10954 ggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccattct 11013
Query: 625 cataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatctgct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11014 cataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatctgct 11073
Query: 685 ccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaacaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11074 ccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaacaa 11133
Query: 745 caaaaggccatcattcagcacttgttgatcactaagaattctgctcccaaaaaagattat 804
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11134 caaaaggccatcattcagcacttgttgatcactaagaattctgctcccaagaaagattat 11193
Query: 805 tcacacgtcccatgnncagttttcgttgcagggaaaatgtcaagcggggaaattcnctgt 864
|||||||||||||| |||||| |||| ||||| |||||||| |||| |||| ||||
Sbjct: 11194 tcacacgtcccatgca-agtttttcgtgcaaggaaattgtcaagc-gggagattc-ctgt 11250
Query: 865 cctttcctctcacgatttgaacaattctacgaagtgaacaggtttgtaagatattttaca 924
|| || ||||||||||||||||||||||||| |||||||| || |||||| |||||| ||
Sbjct: 11251 ccctt-ctctcacgatttgaacaattctacg-agtgaacaagtatgtaag-tatttt-ca 11306
Query: 925 gaaaggg 931
|||||||
Sbjct: 11307 gaaaggg 11313
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7577
Number of Sequences: 1807
Number of extensions: 7577
Number of successful extensions: 189
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)