BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG08RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1518 1195 0.0
>3x_Contig1518
Length = 11021
Score = 1195 bits (603), Expect = 0.0
Identities = 717/751 (95%), Gaps = 5/751 (0%)
Strand = Plus / Plus
Query: 48 gaaaatgttcgtggacgttttcaacagtttacccttcgctgccatcattcaagataaaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4668 gaaaatgttcgtggacgttttcaacagtttacccttcgctgccatcattcaagataaaat 4727
Query: 108 attctgcgttcacggtggtatctcgccacaattgtccaatttgaaacaagtaagcaaaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4728 attctgcgttcacggtggtatctcgccacaattgtccaatttgaaacaagtaagcaaaat 4787
Query: 168 ccaaaggcccacagatattccggacgacggtcttttaactgatttgttatggtcggatcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4788 ccaaaggcccacagatattccggacgacggtcttttaactgatttgttatggtcggatcc 4847
Query: 228 tgactcttctattaacgattggtctctgaatgatcgtggtgtctcttacactttttcaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4848 tgactcttctattaacgattggtctctgaatgatcgtggtgtctcttacactttttcaaa 4907
Query: 288 gaaaaacattgctgatttttgttccaagttcaatttcgatttaattatcagagggcatat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4908 gaaaaacattgctgatttttgttccaagttcaatttcgatttaattatcagagggcatat 4967
Query: 348 ggtggtagaagatggctatgaattctttgcaaggaaaaaattggtcacgattttcagtgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 ggtggtagaagatggctatgaattctttgcaaggaaaaaattggtcacgattttcagtgc 5027
Query: 408 accaaactattgtggtgaattcgaaaattggggtgctgtcatgagtgtgactactggctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5028 accaaactattgtggtgaattcgaaaattggggtgctgtcatgagtgtgactactggctt 5087
Query: 468 gatgtgcagctttgaactattgaaacctcacggtnttaaaagaaagagatanaagaagtt 527
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 5088 gatgtgcagctttgaactattgaaacctcacggtattaaaagaaagagataaaagaagtt 5147
Query: 528 tgcttccgattagatgtttacatgaaacaatatctattntttttttcattacgactattc 587
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5148 tgcttccgattagatgtttacatgaaacaatatctattttttttttcattacgactattc 5207
Query: 588 cttttctacaaattttcatacatagtgtatcatgaatcattgatgaatattcattttctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5208 cttttctacaaattttcatacatagtgtatcatgaatcattgatgaatatttcatttctc 5267
Query: 648 tcc-tttatggctttattattccgaatatagtaattccgttgcgtcgcacccttttcaaa 706
||| |||||||||||||||| | || |||||||||||||| ||||||| || ||||
Sbjct: 5268 tccttttatggctttattatactgataatagtaattccgttcgttcgcacctttctcaat 5327
Query: 707 tttgaaaatcaatttcataaatctggcccaattaccgaattccctttttc-catttttac 765
|||||| |||| |||||| ||| | |||| || || || ||||||| |||||||||
Sbjct: 5328 cttgaaatacaatatcataatactgtcacaatcactgattt--ctttttctcatttttac 5385
Query: 766 ttccttttttacactaggccaataaaatttt 796
|||| ||||||||||||||||||| ||||||
Sbjct: 5386 ttcc-tttttacactaggccaatacaatttt 5415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8795
Number of Sequences: 1807
Number of extensions: 8795
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)