BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG09FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig761 206 6e-53
3x_Contig1663 101 2e-21
>3x_Contig761
Length = 2799
Score = 206 bits (104), Expect = 6e-53
Identities = 130/135 (96%), Gaps = 3/135 (2%)
Strand = Plus / Plus
Query: 650 atgtgatacgatcttcggccaaatgaccttgctgccccgctcccagatcttctgagtctg 709
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 atgtgatacgatcttcggccaaatgaccttgctgccccgctccgagatcttctgagtctg 60
Query: 710 aaacggccaaatct-aaaacgaaactcgagaaacagaaaaaaacattccttttcgcgatc 768
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 aaacggccaaatctaaaaacgaaactcgagaaacagaaaaaaacattcc-tttcgcgatc 119
Query: 769 cgggacanaaaggca 783
| ||||| |||||||
Sbjct: 120 c-ggacagaaaggca 133
>3x_Contig1663
Length = 13533
Score = 101 bits (51), Expect = 2e-21
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 85 tcacaggatacgccttgaaactacgatgttggaagaatgttgacaaggaag 135
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tcacaggatacgccttgaaactacgatgttggaagaatgttgacaaggaag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5374
Number of Sequences: 1807
Number of extensions: 5374
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)