BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG09RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig929 609 e-174
3x_Contig1056 323 4e-88
>3x_Contig929
Length = 3696
Score = 609 bits (307), Expect = e-174
Identities = 357/367 (97%), Gaps = 5/367 (1%)
Strand = Plus / Minus
Query: 286 atccattgccctaatgattcctttttctaaggtttgtatcaaagttaaaatattggcctt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3682 atccattgccctaatgattcctttttctaaggtttgtatcaaagttaaaatattggcctt 3623
Query: 346 ttcatgaattgttttcgaggaatctttttgaagcatatctttggcaagttcaataacttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3622 ttcatgaattgttttcgaggaatctttttgaagcatatctttggcaagttcaataacttt 3563
Query: 406 tagcgattcctcgggataatactgccagtcgaaacctaatttggttaaagattcgtagca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3562 tagcgattcctcgggataatactgccagtcgaaacctaatttggttaaagattcgtagca 3503
Query: 466 gtaaagcagtaaaatgccagatgagtgaagtatatgtgctgaatggcacacttcttcctt 525
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 3502 gtaaagcagtaaaatgccagaagagtgaagtatatgtgctgaatggcacacttcttccct 3443
Query: 526 ttcttt-gaatgcattgtngggcac-ttatactgtttatcctcatgatacttttctatga 583
|||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3442 ttctttggaatgcattgt-gggcactttatactgtttatcctcatgatacttttctatga 3384
Query: 584 aaaggacaa-gcaatccagactttgcattatcctggacatatcagcaggagaagcgagaa 642
||| ||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 3383 aaaagacaaggcaatcaagactttgcaatatcctggacatatcagcaggag-agcgagaa 3325
Query: 643 gacttca 649
|||||||
Sbjct: 3324 gacttca 3318
>3x_Contig1056
Length = 3113
Score = 323 bits (163), Expect = 4e-88
Identities = 184/187 (98%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 48 tatcatccttttcatatttcaatccgcttgacaaagagtgacttgtagatgattgagagt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 tatcatccttttcatatttcaatccgcttgacaaagagtgacttgtagatgattgagagt 2976
Query: 108 ctcttgcgttgtcaactagcgcagcctggcgctcagcattaagaagacaattcaagtatg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 ctcttgcgttgtcaactagcgcagcctggcgctcagcattaagaagacaattcaagtatg 3036
Query: 168 tacctttcataatggactggtatgttaattcgaca-ctcgg-cattttgcagc-cagtcc 224
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 3037 tacctttcataatggactggtatgttaattcgacatctcggccattttgcagcncagtcc 3096
Query: 225 tttggag 231
|||||||
Sbjct: 3097 tttggag 3103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8451
Number of Sequences: 1807
Number of extensions: 8451
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 2
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)