BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG10RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1435 1217 0.0
>3x_Contig1435
Length = 8899
Score = 1217 bits (614), Expect = 0.0
Identities = 658/666 (98%), Gaps = 5/666 (0%)
Strand = Plus / Plus
Query: 63 cattttctctcaaccaacagtccttcagcagacaacgcgacagagaagcaggaagccaaa 122
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2887 cattttctctcaaccaacag-ccttcagcagacaacgcgacagagaagcaggaagccaaa 2945
Query: 123 aatgccgtcagtactgctgtaaaacctgcattctcctttggtagcaccccagcagcccta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2946 aatgccgtcagtactgctgtaaaacctgcattctcctttggtagcaccccagcagcccta 3005
Query: 183 ccttctgatacaaccccaaaagaagctgctgcaccatcattttcgttcgggaccacaaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3006 ccttctgatacaaccccaaaagaagctgctgcaccatcattttcgttcgggaccacaaag 3065
Query: 243 aaacctgttcaaggtgatatgagttcgaaacctgcattctcttttggaagttcctctgcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3066 aaacctgttcaaggtgatatgagttcgaaacctgcattctcttttggaagttcctctgcc 3125
Query: 303 atccagcagccctcaattgaaaaagcttccaatgcaattccttcgtttgcaagtcagaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3126 atccagcagccctcaattgaaaaagcttccaatgcaattccttcgtttgcaagtcagaac 3185
Query: 363 accagtggccagcctgtcagcggactcaaatttgatttgacagggtttaaaaataataat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3186 accagtggccagcctgtcagcggactcaaatttgatttgacagggtttaaaaataataat 3245
Query: 423 agacaaactactccgactccgttttcagattcatcaaatgttggatctgctcgtggaagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3246 agacaaactactccgactccgttttcagattcatcaaatgttggatctgctcgtggaagc 3305
Query: 483 aaccctcctgtcccattctcatttgataatgtcgttcaacctgggaataagataagtgta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306 aaccctcctgtcccattctcatttgataatgtcgttcaacctgggaataagataagtgta 3365
Query: 543 acgcagcctactcaaactacatttacttttgcacaacaaaatcaaaaaccatttactttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 acgcagcctactcaaactacatttacttttgcacaacaaaatcaaaaaccatttactttt 3425
Query: 603 acttggagtgggccaagcactaccaacagtttcacctgcatttggaaccagttccaatca 662
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3426 actggaagtgggccaagcactaccaacag-ttcacctgcatttggaaccagttccaatca 3484
Query: 663 gcctaatgtaccttttttcattcgggcggaagctcagcttctttcactcccccaggtacc 722
|||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct: 3485 gcctaatgtacc-tttttcattc-ggcggaagctcagcttcttccact-ccccaggtacc 3541
Query: 723 agcatt 728
||||||
Sbjct: 3542 agcatt 3547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7477
Number of Sequences: 1807
Number of extensions: 7477
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)