BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG11RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 948 0.0
>3x_Contig787
Length = 1880
Score = 948 bits (478), Expect = 0.0
Identities = 601/634 (94%), Gaps = 6/634 (0%)
Strand = Plus / Minus
Query: 58 tcgaagttaaaccatacttagtcattcttcgtcgtaatacatcataatcatcgtaaaagc 117
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 817 tcgaagttaaaccatacttagtcattcttcgtcgtaat-catcataatcatcgtaaaagc 759
Query: 118 atcatttcaaatgttgtggaatattaattgcgaaatggggagaggggatgggtagtcaaa 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 758 atcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtcaaa 699
Query: 178 taataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttacgggaggga 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 698 taataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttaggggaggga 639
Query: 238 tggtacatcttgtttgttagtctctatctcactctataaagtgcacatgagtgtgggtgt 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgggtgt 579
Query: 298 agtcatttaatttaatgttttccttttttcctttttataatgctatcgtgcgtgtgtggg 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 578 agtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgtggg 519
Query: 358 catgaaattgtataaacgtttagtttctgttaatcattaatcaaactgaaaccttttcca 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 catgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttttcca 459
Query: 418 attgatcatcacttggcttacaataaataaaattggccgtggaacctgtcatagcagcaa 477
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 458 attgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagcagcaa 399
Query: 478 cttctttcgtttggtcaactctttcgatatacgatttcaaatgatgagaggatcaatctg 537
|||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 398 cttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaatctc 339
Query: 538 tgtggaacttctcgtgacccgcagataccgatgac-aaagtcgagatgacactggaacca 596
||||||||||||||||||| || ||||| | ||| ||||| |||||||||||||||||
Sbjct: 338 tgtggaacttctcgtgaccgacaaatacc-aagacaaaagtgaagatgacactggaacca 280
Query: 597 gtcaagatagccataactttagaatactcctcgtttgttacatcaccctgc-gagtttca 655
||||||||||||||||||||||| || |||| ||||||||| ||| ||||| ||||| ||
Sbjct: 279 gtcaagatagccataactttagagtaatccttgtttgttacttca-cctgcggagttcca 221
Query: 656 tttcaatggggtacaaatcagcccaatcgttttc 689
||| || ||||||||||||||| ||||||||||
Sbjct: 220 -ttcgattgggtacaaatcagccaaatcgttttc 188
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7261
Number of Sequences: 1807
Number of extensions: 7261
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)