BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZG12FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig548 1229 0.0
>3x_Contig548
Length = 2225
Score = 1229 bits (620), Expect = 0.0
Identities = 662/676 (97%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 231 aaacgtgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaacgtgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgac 445
Query: 291 tatgctccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgctccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatct 505
Query: 351 gccgatggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccgatggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggt 565
Query: 411 tgggccaagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttatt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgggccaagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttatt 625
Query: 471 gccgttgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gccgttgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattct 685
Query: 531 accgaaatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagaca 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 accgaaatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagaca 745
Query: 591 gcccaggctatcaatgacttcaatcatggngaacaattgccattaatgatcctagccaac 650
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 746 gcccaggctatcaatgacttcaatcatggtgaacaattgccattaatgatcctagccaac 805
Query: 651 tggagaggtttctctggtggacaacgtgatatgtacaacgaagttntgaagtatggttct 710
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 806 tggagaggtttctctggtggacaacgtgatatgtacaacgaagttttgaagtatggttct 865
Query: 711 ttcatcgttgatgcattggttgattacaaacagcctatnattacatacattcctncaact 770
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 866 ttcatcgttgatgcattggttgattacaaacagcctataattacatacattcctccaact 925
Query: 771 ggtgaactaagaagtggttcttgggttgttgttgatcccactatcaatgctgaccaaatg 830
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 926 ggtgaactaagaggtggttcttgggttgttgttgatccaactatcaatgctgaccaaatg 985
Query: 831 ggaatgtatgctgatataaactcaaaagctggtgtttttgaacccagaggtatggtccgg 890
| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||
Sbjct: 986 gaaatgtatgctgatataaactcaagagctggtgttttggaaccagaaggtatggt-cgg 1044
Query: 891 aatcaaataccgtaga 906
|||||||||||||||
Sbjct: 1045 tatcaaataccgtaga 1060
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5647
Number of Sequences: 1807
Number of extensions: 5647
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)