BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH01RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1381 1142 0.0
>3x_Contig1381
Length = 7318
Score = 1142 bits (576), Expect = 0.0
Identities = 620/632 (98%), Gaps = 2/632 (0%)
Strand = Plus / Minus
Query: 48 aatatcgaagatgagtttctggtcaatggagtatcatcttcactgtcagttggggaaaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5055 aatatcgaagatgagtttctggtcaatggagtatcatcttcactgtcagttggggaaaag 4996
Query: 108 gtttctgatgacgtcaaagattttttgttcttcaaagaggtgttatttaaggcctctaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4995 gtttctgatgacgtcaaagattttttgttcttcaaagaggtgttatttaaggcctctaat 4936
Query: 168 gactgttcagataagtatgtcgtcaatggcttgtcagacaaaattgttaacaacgcctta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4935 gactgttcagataagtatgtcgtcaatggcttgtcagacaaaattgttaacaacgcctta 4876
Query: 228 actcccgtattattcgtaacaacaatgacacaatcacagttcatcggcgacactttatga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4875 actcccgtattattcgtaacaacaatgacacaatcacagttcatcggcgacactttatga 4816
Query: 288 gaaaatttgtcgtttaaccggcggtaatattccttaaacggggtggttgatttggatatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4815 gaaaatttgtcgtttaaccggcggtaatattccttaaacggggtggttgatttggatatc 4756
Query: 348 atattataattttctatttgatcaaagtcaacgcaacaagagtgcaacatttctttcgaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4755 atattataattttctatttgatcaaagtcaacgcaacaagagtgcaacatttctttcgaa 4696
Query: 408 aggaaagtggtaaaccatttcaaagaggttggagtgacttttattttataattgatatga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4695 aggaaagtggtaaaccatttcaaagaggttggagtgacttttattttataattgatatga 4636
Query: 468 catctttcgccaagagtttcttttagttccgtccaaacagtctctatcaaaaac-tgact 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4635 catctttcgccaagagtttcttttagttccgtccaaacagtctctatcaaaaacttgact 4576
Query: 527 gtctctacgtatctcaatgagccactagaagaaaatttccaatgggaatcaaaatcgcct 586
|||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||
Sbjct: 4575 gtctctacgtatctcaatgagccactagaagaaatttccaaatggaaatcaaaatcgcct 4516
Query: 587 gcgagttgtcttgaaagtgttcaaaggtcatcattttcacctattatactcttc-aaatt 645
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 4515 gcgagttgtcttgaaagtgtccaaagttcatcattttcacctattatactcttcaaaatt 4456
Query: 646 ttatttcttcacctatgcaacttaaacttttt 677
|||| ||| |||||||||||||||||||||
Sbjct: 4455 ttatctctcagcctatgcaacttaaacttttt 4424
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,323
Number of Sequences: 1807
Number of extensions: 18323
Number of successful extensions: 2243
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)