BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH02FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 1677 0.0
>3x_Contig1664
Length = 15696
Score = 1677 bits (846), Expect = 0.0
Identities = 881/889 (99%), Gaps = 3/889 (0%)
Strand = Plus / Minus
Query: 86 gtagctggaaacaactggcaagtatgttaggaatcggttttctgcgttttttttagttcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 gtagctggaaacaactggcaagtatgttaggaatcggttttctgcgttttttttagttcc 1462
Query: 146 ctatagtatagttccaagcgaaaaaagaaatttgcgcacacccaaaaaagggaagaaacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 ctatagtatagttccaagcgaaaaaagaaatttgcgcacacccaaaaaagggaagaaacc 1402
Query: 206 ttttgatgtggaatatgtgcgtgtgtgcgtgtgtgcgtgcgttttttggcctcgaacgaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 ttttgatgtggaatatgtgcgtgtgtgcgtgtgtgcgtgcgttttttggcctcgaacgaa 1342
Query: 266 aagaattacacgaacatgcagcagaacaacggatattaatccgcaaaaatatggaaataa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 aagaattacacgaacatgcagcagaacaacggatattaatccgcaaaaatatggaaataa 1282
Query: 326 taatagaaacgtaatcagcaaagaaaccagaaaagaaaaagactggaaggagaagaaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 taatagaaacgtaatcagcaaagaaaccagaaaagaaaaagactggaaggagaagaaaaa 1222
Query: 386 agtacacttgagaaaggccgtagtgattctagtacgaaaaatgtatgcagatactttata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 agtacacttgagaaaggccgtagtgattctagtacgaaaaatgtatgcagatactttata 1162
Query: 446 ctgctgaaaagtcttgttgtattttcttttggctccaggaggcgaaaagttgatacaagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ctgctgaaaagtcttgttgtattttcttttggctccaggaggcgaaaagttgatacaagt 1102
Query: 506 tcaactgagtcagcctaatgagacagtttcaacactattacagaataacgaaatgacagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tcaactgagtcagcctaatgagacagtttcaacactattacagaataacgaaatgacagg 1042
Query: 566 gaatcagaggaggaaacggaaaataactcgtgtgatgaatgtattagtacttaactccgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gaatcagaggaggaaacggaaaataactcgtgtgatgaatgtattagtacttaactccgt 982
Query: 626 aaaagcgcttttatttcctgcttacgttaataaccagtgagaagaatatacagactttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 aaaagcgcttttatttcctgcttacgttaataaccagtgagaagaatatacagactttct 922
Query: 686 gattccaacttttggtcttcttttaaagccttatctctggttttatgcctcgaacaactt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gattccaacttttggtcttcttttaaagccttatctctggttttatgcctcgaacaactt 862
Query: 746 ct-aaactgaagcacggatctttaaaatgtttagcgtgattgaaatcaatgcagtaacta 804
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctaaaactgaagcacggatctttaaaatgtttagcgtgattgaaatcaatgcagtaacta 802
Query: 805 gaatactctttgtttctccttagtgatgattcttttgccgt-atatcanaccactcacaa 863
|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct: 801 gaatactctttgtttctccttagtgatgattc-tttgccgtaatatcaaaccactcacaa 743
Query: 864 gcctaagacgtggcaactgttactagttgagactctctttatgtgcgcaaactaaaaata 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gcctaagacgtggcaactgttactagttgagactctctttatgtgcgcaaactaaaaata 683
Query: 924 ggatcttttcgatggatatgctcgacggaattttttttgtactgaaatt 972
|||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct: 682 ggatctttcggatggatatgctcgacggatttttttttgcactgaaatt 634
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7755
Number of Sequences: 1807
Number of extensions: 7755
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)