BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH02RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 987 0.0
>3x_Contig1572
Length = 12810
Score = 987 bits (498), Expect = 0.0
Identities = 563/584 (96%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 91 atggaaccatatggggtagcagacttcagggcatctaaaaatatgcagtttat-tctagt 149
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 8 atggaaccatatggggtagcagacttcagggcatctaaaaatatgcagttaatatctagt 67
Query: 150 tacttcatcgatcgttggtggaaatagtcggttcaacttagctgcggaaagagtgggaat 209
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tacttcatcgatcgttagtggaaatagtcggttcaacttagctgcggaaagagtgggaat 127
Query: 210 gtcttcattgaggacatcaattcttaacggtattaaaaacttctgtaagaactctataat 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtcttcattgaggacatcaattcttaacggtattaaaaacttctgtaagaactctataat 187
Query: 270 tgacaaagtgaagtttgtttgtaatgttaaaagttcttgacatacggaattgattagtgg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgacaaagtgaagtttgtttgtaatgttaaaagttcttgacatacggaattgattagtgg 247
Query: 330 ttcgtccttttcagtctgctcttctggtgaaaagtcgggcgttgtgtacacgcgttctgt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcgtccttttcagtctgctcttctggtgaaaagtcgggcgttgtgtacacgcgttctgt 307
Query: 390 ttgctccggcgagtattctgttaacgggtcaaacaattgctctaattgttcacctaggta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttgctccggcgagtattctgttaacgggtcaaacaattgctctaattgttcacctaggta 367
Query: 450 aaataccaactcattattggcatcaatagattcangcttgttttcatacactacgtcaac 509
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 368 aaataccaactcattattggcatcaatagattcaggcttgttttcatacactacgtcaac 427
Query: 510 tagcagtgattgtactgatctangacagatcaacccctgcaaaatgatgcttttccccca 569
|||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |
Sbjct: 428 tagcagtgattgtactgatctaggacagatcaacccatgcaacatgatgcttttccccaa 487
Query: 570 atttccagggggttcatatttcaccattttacttccttgggccaaattgcctgaatgggt 629
||||||||||| ||||| ||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 488 atttccaggggtacaatattccaccattttacatccattggccaaatcgcctgaatgggt 547
Query: 630 ctgatcattctcgaatttcaatggaactccttcaaggatctttt 673
|||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct: 548 ctgatcatactcgaatttcaatggaactccatcagtgatctttt 591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6161
Number of Sequences: 1807
Number of extensions: 6161
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)