BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH03FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1398 0.0
>3x_Contig1801
Length = 57606
Score = 1398 bits (705), Expect = 0.0
Identities = 797/820 (97%), Gaps = 6/820 (0%)
Strand = Plus / Plus
Query: 88 ctatgcttttcttgagcgtttgggtttcgttcatatatttgttcttttcagtattggcct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46258 ctatgcttttcttgagcgtttgggtttcgttcatatatttgttcttttcagtattggcct 46317
Query: 148 tcaccaaattattttggagtttttggttcgcatgtttcaatgaactggtgatagagtcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46318 tcaccaaattattttggagtttttggttcgcatgtttcaatgaactggtgatagagtcat 46377
Query: 208 caccatcttcgttttttttgtcactgtcatcactggttccgaattcaatcttcttcatgg 267
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46378 caccatcatcgttttcgttgtcactgtcatcactggttccgaattcaatcttcttcatgg 46437
Query: 268 cattcaattcttgctttattttttcataatctgagtagttcgttaacttgcgtctcaatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46438 cattcaattcttgctttattttttcataatctgagtagttcgttaacttgcgtctcaatg 46497
Query: 328 tctctaattccgatttataagtctgcgtttcaagtgcagatgatttcaattgtgagctca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46498 tctctaattccgatttataagtctgcgtttcaagtgcagatgatttcaattgtgagctca 46557
Query: 388 acgtttgggatgtttccttcaaactcttgcgttcttcttctaaacatgtaaccaatttag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46558 acgtttgggatgtttccttcaaactcttgcgttcttcttctaaacatgtaaccaatttag 46617
Query: 448 cattttcactttccaattggttcaatttagtctctttctcttgaaatatggaatcctgtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46618 cattttcactttccaattggttcaatttagtctctttctcttgaaatatggaatcctgtt 46677
Query: 508 gttcatcgctcttcaatttggttacctcagaatttaattcttcattacgtgattcaagac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46678 gttcatcgctcttcaatttggttacctcagaatttaattcttcattacgtgattcaagac 46737
Query: 568 tcatgatacgaatttgtgcagcctcaagttcttgtaccagaagctcactttgagcgctat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46738 tcatgatacgaatttgtgcagcctcaagttcttgtaccagaagctcactttgagcgctat 46797
Query: 628 tctttccactaacgagaacggtgtcatcatcgccatcttcttgttgctccaaatcgacct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46798 tctttccactaacgagaacggtgtcatcatcgccatcttcttgttgctccaaatcgacct 46857
Query: 688 gagcacctattttcttttccaagatgctattgggtatttttcaacgtttctaactgtttc 747
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 46858 gagcacctattttcttttccaagatgctatt-ggtatttttcaacgtttctaactgtttc 46916
Query: 748 aataattcgtcctctctatta-tccaattacgttgcttttctttcccatttgggagtaat 806
||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 46917 aataattcgtcctctctattattccaattacgttgcttttc-ttcccatttggatgtaat 46975
Query: 807 ttcttttctctttggcgattaatctatggnatatgttctgacccgaa-tttgtttcagat 865
||| ||||||||||||||||||||||| | ||| ||| | ||||| |||||| ||||
Sbjct: 46976 ttc-tttctctttggcgattaatctattggataatgtcttagccgaattttgttcaagat 47034
Query: 866 ccgataatcttttcttttaaatggtcataatcggcccact 905
|||||||||||||| |||||| |||||||||||| ||||
Sbjct: 47035 ccgataatcttttc-tttaaagtgtcataatcggcacact 47073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8815
Number of Sequences: 1807
Number of extensions: 8815
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)