BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZH03RM1.SCF screened BAC_end
         (970 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1801                                                         999   0.0  

>3x_Contig1801 
          Length = 57606

 Score =  999 bits (504), Expect = 0.0
 Identities = 572/588 (97%), Gaps = 5/588 (0%)
 Strand = Plus / Minus

                                                                         
Query: 53    cttcaccaagtatgccaactctcttatgggaaaatttgaatctttactgaagcaaattcc 112
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48056 cttcaccaagtatgccaactctcttatgggaaaatttgaatctttactgaagcaaattcc 47997

                                                                         
Query: 113   ggaatctccagaaatcaaacagcaattacacgaattacgtaccataattgctgatccacc 172
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47996 ggaatctccagaaatcaaacagcaattacacgaattacgtaccataattgctgatccacc 47937

                                                                         
Query: 173   aaagacaagtatcacatcccaatcgggtaatctacaagattctgatgatctatactccgc 232
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 47936 aaagacaagtatcacatcccaatcgggtaatctacaagattctgatgatctagactccgc 47877

                                                                         
Query: 233   caacaaaccaatatcgattgagtcaccgcagttatatcgttattggtcaggttaataata 292
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47876 caacaaaccaatatcgattgagtcaccgcagttatatcgttattggtcaggttaataata 47817

                                                                         
Query: 293   tagacaatattcatgtattatatagcctcgtaacattatattaatttaaactattgaaac 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47816 tagacaatattcatgtattatatagcctcgtaacattatattaatttaaactattgaaac 47757

                                                                         
Query: 353   aacacaaaaagtcaagcctctccttgtccaaatgcaacatcttcgttggagtaaatccta 412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47756 aacacaaaaagtcaagcctctccttgtccaaatgcaacatcttcgttggagtaaatccta 47697

                                                                         
Query: 413   cttgttttttcctttgtaccttgtcttcaggaattatgtccgtatgctatattgtcttta 472
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47696 cttgttttttcctttgtaccttgtcttcaggaattatgtccgtatgctatattgtcttta 47637

                                                                         
Query: 473   aaatatgaaaatattgggaaccttcaaaaaaaatagcttttactaaacacgaattcgata 532
             ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 47636 aaatatgaaaatattggaaaccttcaaaaaaaatagctttaactaaacacgaatacgata 47577

                                                                         
Query: 533   tttaatatttccaatatcaggacaattgaatgattctggtaatccgttgtaaaaaggcgg 592
             ||||||||| |||||||||| ||||||||||||| ||||| || |||||| ||| | |||
Sbjct: 47576 tttaatattcccaatatcagaacaattgaatgatactggt-attcgttgt-aaaggtcgg 47519

                                                             
Query: 593   atttgcatttattaaggaacccattaacaagttctggcgatgaatttg 640
             ||||||| ||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 47518 atttgca-ttattaagg-acccagtaacaagttct-gcgatgaatttg 47474


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,968
Number of Sequences: 1807
Number of extensions: 17968
Number of successful extensions: 204
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)