BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZH04RM1.SCF screened BAC_end
         (985 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1612                                                         262   1e-69

>3x_Contig1612 
          Length = 15608

 Score =  262 bits (132), Expect = 1e-69
 Identities = 183/194 (94%), Gaps = 5/194 (2%)
 Strand = Plus / Minus

                                                                         
Query: 289   tcgtttggtttttccctttattctcanagcgataa-gtcttttcgattgactttgaacgg 347
             ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 15608 tcgtttggtttttcc-tttattctcaaagcgataaagtcttttcgattgactttgaacgg 15550

                                                                         
Query: 348   agganagaaagataga-gataagaagcacggaccaagtacaagctactagtatgagtgtc 406
             |||| |||||||  || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15549 aggaaagaaagaaggaagaaaagaagcacggaccaagtacaagctactagtatgagtgtc 15490

                                                                         
Query: 407   gatgatgttgggtttctttctttgacccatttttgtgataagcatgggtccgaagtttct 466
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 15489 gatgatgttgggtttctttctttgacccatttttgtgataagcat-ggtccgaagtttct 15431

                           
Query: 467   -atgtttacgcaaa 479
              ||| |||||||||
Sbjct: 15430 aatggttacgcaaa 15417


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8534
Number of Sequences: 1807
Number of extensions: 8534
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)