BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH05FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1479 0.0
>3x_Contig1660
Length = 13166
Score = 1479 bits (746), Expect = 0.0
Identities = 862/885 (97%), Gaps = 12/885 (1%)
Strand = Plus / Minus
Query: 85 atcacccaattgcaagcgagcgtattcattgttcagtagatcttttggagtttctttgat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 atcacccaattgcaagcgagcgtattcattgttcagtagatcttttggagtttctttgat 5715
Query: 145 aactaaggtatcgtagtcatagtttcgaatcttctctttattttgctcgatgaatgaata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 aactaaggtatcgtagtcatagtttcgaatcttctctttattttgctcgatgaatgaata 5655
Query: 205 tacaccgcttgtattataagactcagcttcgtagcttttcaatccatgagtgtaatttcc 264
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5654 tacaccgcttgtatcagaagactcagcttcgtagcttttcaatccatgagtgtaatttcc 5595
Query: 265 tgcaactacagctttctccttaccatcatatataatgacattgtcgtacactatgtcatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5594 tgcaactacagctttctccttaccatcatatataatgacattgtcgtacactatgtcatc 5535
Query: 325 tgagtctatgtttagatcattacgtcgttgatgcctagaatgtcttcttaatcggggaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5534 tgagtctatgtttagatcattacgtcgttgatgcctagaatgtcttcttaatcggggaaa 5475
Query: 385 aaatttaggactagattcttggtccctgggtgttgtagcgggtttactttcgggactctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474 aaatttaggactagattcttggtccctgggtgttgtagcgggtttactttcgggactctg 5415
Query: 445 aggtagttgcttgggcagtttggtcttaattactggagagctcttctcgcttggactttg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5414 aggtagttgcttgggcagtttggtcttaattactggagagctcttctcgcttggactttg 5355
Query: 505 tgggcttttcaaaggtataatagggccacttgatgggaaaaattcgatgtctactatgaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354 tgggcttttcaaaggtataatagggccacttgatgggaaaaattcgatgtctactatgaa 5295
Query: 565 ttggacatcttttgcaagtgaattcaattcaacagacttccaaacgacataatattctct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5294 ttggacatcttttgcaagtgaattcaattcaacagacttccaaacgacataatattctct 5235
Query: 625 tagtgctttaggtctcaatttgttgatattaat-aaatcctggtctaggacgtccctccg 683
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5234 tagtgctttaggtctcaatttgttgatattaataaaatcctggtctaggacgtccctccg 5175
Query: 684 tcgac-accaagaagatcattcttc-atcgtggccttcgcctaaatataatgaactccat 741
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5174 tcgacaaccaagaagatcattcttcaatcgtggccttcgcctaaatataatgaactccat 5115
Query: 742 attagtatcccagtctgcagctctaacattaagttctaagtttcccctaatggaaatgaa 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5114 attagtatcccagtctgcagctctaacattaagttctaagtttcccctaatggaattgaa 5055
Query: 802 tcgtattgcattttgacccatttttaacatgaaatatgtttccaacttcaagctgttttn 861
|||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct: 5054 tcgtattgcattttgacccagttttaacatgaagtatg-ttccaacttcaagctgtttt- 4997
Query: 862 ccgaacgttatttttactgggncagaaattatcaatttaccattttgtncgtatcattaa 921
|||| |||| |||||||||| ||| ||||||||||||||||| |||| |||||||||||
Sbjct: 4996 ccgacagtta-ttttactggg-cag-aattatcaatttaccatcttgt-cgtatcattaa 4941
Query: 922 ttccactgcgaggaaggttnctaaattcgaatagtatcaaacata 966
|||||||| || ||||| || ||||||||||||||||||||||
Sbjct: 4940 -tccactgc-agtgaggttcct-aattcgaatagtatcaaacata 4899
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6241
Number of Sequences: 1807
Number of extensions: 6241
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)