BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH05RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1404 0.0
3x_Contig1803 353 4e-97
>3x_Contig1802
Length = 45229
Score = 1404 bits (708), Expect = 0.0
Identities = 829/859 (96%), Gaps = 8/859 (0%)
Strand = Plus / Minus
Query: 47 tttgtagagaatcgcaaaaccaagacttataatatagattcctaacctcaaagaatttcc 106
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 38320 tttgtagagaatcgcaaaaccaagacttagaatatagattcctaacctcaaagaatttcc 38261
Query: 107 atactctcaatacagttaactaaagaagaagaagcgtatattgtcgcaatcggtagtgta 166
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38260 at-ctctcaatacagttaactaaagaagaagaagcgtatattgtcgcaatcggtagtgta 38202
Query: 167 tgcctgcctgttcaatcttatccttcctggtttaaagaagaaataaagaaagatgtcagt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38201 tgcctgcctgttcaatcttatccttcctggtttaaagaagaaataaagaaagatgtcagt 38142
Query: 227 ctaactgaatgctttttagagtctgttaaaagaattgtagaacgctgagcagcattcatt 286
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 38141 ctaactgaatgctttttagagtctgttaaaagaattgtagaaggctgagcagcattcatt 38082
Query: 287 tatgaaaaaatatacaaactctcgataaattacggagagctgatcaaggacttcgccaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38081 tatgaaaaaatatacaaactctcgataaattacggagagctgatcaaggacttcgccaaa 38022
Query: 347 agagtttggaagctataagtagaggtaaaaaataccgtgctggttgacatataaaaagga 406
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 38021 agagtttggaagctataagtagaggtaaaaaataccgtgctggttgacatagaaaaagga 37962
Query: 407 ctctatgaaatcgtcgtgaatttgttgccagagaaatatcgcgtcgcaaatttcacctat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37961 ctctatgaaatcgtcgtgaatttgttgccagagaaatatcgcgtcgcaaatttcacctat 37902
Query: 467 cttcaagggaacatgaaactggcaaacttttaagaattctaagccgaatgcagaatgaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37901 cttcaagggaacatgaaactggcaaacttttaagaattctaagccgaatgcagaatgaaa 37842
Query: 527 gcaatgagagacattcctaaaataatagcagtaagaactgtctcaataacagctcttcga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37841 gcaatgagagacattcctaaaataatagcagtaagaactgtctcaataacagctcttcga 37782
Query: 587 ataacaaccgtgacccgagaattcctcacacgatggtgcttaacgcataccaaacgcctc 646
||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct: 37781 ataacaaccgtgacccgagaattcctcacacga-ggggcttaacgcaaaccaaacgcctc 37723
Query: 647 atgaacatttngccaagtctaaagtcactataaatcgctacgtggatttaataagtgcca 706
|||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 37722 atgaacatttgccaaagtctaaagtcactaaaaatcgctacgtggatttaataagtgcca 37663
Query: 707 tcagaaccaccatatgtgtggcctgagacaaatctttttataactcctcggatgaatttg 766
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 37662 tcagaaccaccatatgtgtggcctgagacaaatcttttcataacttctcggatgaatctg 37603
Query: 767 attatgaaattttcacccaggcaaacgttaaacttcagggtctttaaaagagagttgact 826
||||||||||||||||||||||||||||||||| |||||||| ||| ||||| | ||||
Sbjct: 37602 attatgaaattttcacccaggcaaacgttaaac-tcagggtc-ttagaagag-ggtgac- 37547
Query: 827 ttgaaactaaagtttgaaggcattaaaatttactggaaaagcccctatttgctccaaatg 886
||||| ||||||||||| |||| || |||||||| | |||| |||||||||||||| |||
Sbjct: 37546 ttgaagctaaagtttgagggca-tagaatttact-gtaaaggccctatttgctccagatg 37489
Query: 887 taactcatttattgataaa 905
|| |||||| |||||||||
Sbjct: 37488 tagctcattaattgataaa 37470
>3x_Contig1803
Length = 52241
Score = 353 bits (178), Expect = 4e-97
Identities = 245/265 (92%), Gaps = 2/265 (0%)
Strand = Plus / Minus
Query: 537 acattcctaaaataatagcagtaagaactgtctcaataacagctcttcgaataacaaccg 596
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 52195 acattcctaaaataatagcagtgagaactgtctgaaaaacagctcttcgaataacaaccg 52136
Query: 597 tgacccgagaattcctcacacgatggtgcttaacgcataccaaacgcctcatgaacattt 656
| |||||||||||||||||| || || | |||||||| ||||||||||||||||||||||
Sbjct: 52135 taacccgagaattcctcacatgaggg-gattaacgcaaaccaaacgcctcatgaacattt 52077
Query: 657 ngccaagtctaaagtcactataaatcgctacgtggatttaataagtgccatcagaaccac 716
| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 52076 gccaaagtctaaagtcactaaaaatcgctacgtggatttaataactgccatcagaaccac 52017
Query: 717 catatgtgtggcctgag-acaaatctttttataactcctcggatgaatttgattatgaaa 775
||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 52016 catatgtgtggcctgagcacaaatcttttcgtaacttctcggatgaatctgattatgaaa 51957
Query: 776 ttttcacccaggcaaacgttaaact 800
|||||||||||||||||||| ||||
Sbjct: 51956 ttttcacccaggcaaacgtttaact 51932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7139
Number of Sequences: 1807
Number of extensions: 7139
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)