BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH06RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1435 1061 0.0
>3x_Contig1435
Length = 8899
Score = 1061 bits (535), Expect = 0.0
Identities = 586/599 (97%), Gaps = 3/599 (0%)
Strand = Plus / Plus
Query: 50 tagtcatgcagattgcttaatatattaacagatgtaatattttgttcgttagatcatttt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 tagtcatgcagattgcttaatatattaacagatgtaatattttgttcgttagatcatttt 5874
Query: 110 cttacattatctttgttatttcctcactcctggaaacatatattcattcattcatcttat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 cttacattatctttgttatttcctcactcctggaaacatatattcattcattcatcttat 5934
Query: 170 gtttattaacatttcagttatcgtaaacgtataggtaatccaatattcaatcattccttt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 gtttattaacatttcagttatcgtaaacgtataggtaatccaatattcaatcattccttt 5994
Query: 230 tgcctttgaaagtagtaccactttcttatagtgttttaatgtttcacatacttctctgat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 tgcctttgaaagtagtaccactttcttatagtgttttaatgtttcacatacttctctgat 6054
Query: 290 ggacttgaattgcaaagctctcaaatcagccttcaattctggagagttgttttccaagtc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055 ggacttgaattgcaaagctctcaaatcagccttcaattctggagagttgttttccaagtc 6114
Query: 350 gatgaaagcttgggcaacttgcaattccaattcagttggagcttgggacaaaatcttggc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 gatgaaagcttgggcaacttgcaattccaattcagttggagcttgggacaaaatcttggc 6174
Query: 410 ttgtgggtcagacatcgtggcttatgtttccttgcttggttatatcaagaactcctctaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 ttgtgggtcagacatcgtggcttatgtttccttgcttggttatatcaagaactcctctaa 6234
Query: 470 tggaaaaaaatcgctaatacagtgctgcaactaatattcaactaacgcttatttattgta 529
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6235 tggaaaaaaatcgctaaaacagtgctgcaactaatattcaactaacgctaatttattgta 6294
Query: 530 tataacta-tagaccctatttcaatggtttaaacagt-aaccttcaattctgaaaaag-t 586
|||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 6295 tataactattagacctcatttcaattgtttaaacagtaaaccttcaattctgaaaaagtt 6354
Query: 587 gctgagactgggatgcattacgatgaatgaatactactactggccagtcctggatagct 645
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 6355 gctgagactgggatgcattacgatgaatgaaacctactactggcctggtctggatagct 6413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8642
Number of Sequences: 1807
Number of extensions: 8642
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)