BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH07FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1417 0.0
>3x_Contig1546
Length = 12922
Score = 1417 bits (715), Expect = 0.0
Identities = 766/778 (98%), Gaps = 4/778 (0%)
Strand = Plus / Minus
Query: 83 catcgaatccacaagatcgccgtcctccttacgttttgatcgtttactcttgagcttcga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10851 catcgaatccacaagatcgccgtcctccttacgttttgatcgtttactcttgagcttcga 10792
Query: 143 ttgcttcaagttctgcttttgtaacatctgattattttggaagttgacagaactctggtt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10791 ttgcttcaagttctgcttttgtaacatctgattattttggaagttgacagaactctggtt 10732
Query: 203 ccttacac-catttataagtgataccgcagatatgcgatttttcacgtatatagagcgtg 261
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10731 ccttacacgcatttataagtgataccgcagatatgcgatttttcacgtatatagagcgtg 10672
Query: 262 aaccgagacgtacattgctgaacatcattgtaattatatgtgcctcgatatagaagtatc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10671 aaccgagacgtacattgctgaacatcattgtaattatatgtgcctcgatatagaagtatc 10612
Query: 322 cttctatctttcactgagggaaaaccaacaaggagtaaacagattccagattttccaata 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10611 cttctatctttcactgagggaaaaccaacaaggagtaaacagattccagattttccaata 10552
Query: 382 aacaactcgtagcaacacctaaaaaaacagctcgcttcaaaagtctctaaccctttgaca 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10551 aacaactcgtagcaacacctaaaaaaacagctcgcttcaaaagtctctaaccctttgaca 10492
Query: 442 gtggtgatcgatctagtaaaactaatagcaaccttgacgtagatgttaatgttctgctat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10491 gtggtgatcgatctagtaaaactaatagcaaccttgacgtagatgttaatgttctgctat 10432
Query: 502 cagcacgttatttgttgtatatcgctgttgtattctcgtgaggataaacctctcgttaaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10431 cagcacgttatttgttgtatatcgctgttgtattctcgtgaggataaacctctcgttaaa 10372
Query: 562 tgggttgattattaaaagtgaaaatcaggtatctttattttcaaatttcttttcagtttc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10371 tgggttgattattaaaagtgaaaatcaggtatctttattttcaaatttcttttcagtttc 10312
Query: 622 cggaacctgtagatgtgtgtcataggtaacgattatattacataatttttgtccaaaata 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10311 cggaacctgtagatgtgtgtcataggtaacgattatattacataatttttgtccaaaata 10252
Query: 682 ctaataaacaagtgactttaggctatatgtttgtagccgtggcaacgctttattacccat 741
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10251 ctaataaacaagtgactttaggctatatgtttgtagccgtggcaacgcttaattacccat 10192
Query: 742 agagcatctgattccaacgtgtagcgatttctttttacaacgattgctcgcatgtcaatt 801
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 10191 agagcatctgattccaacgtgtagcgatttcttttaccaacgattgctcgcatgtcaa-t 10133
Query: 802 tgtgtgtttttttttttttctat-taaaattgncttcatttggacttacgtattttat 858
|||||| |||||||||||||||| || ||||| |||||| || ||||||||||||||
Sbjct: 10132 tgtgtg-ttttttttttttctatctagaattgtcttcatctgaccttacgtattttat 10076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,900
Number of Sequences: 1807
Number of extensions: 13900
Number of successful extensions: 191
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)