BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZH07RM1.SCF screened BAC_end (984 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1753 799 0.0 >3x_Contig1753 Length = 23959 Score = 799 bits (403), Expect = 0.0 Identities = 471/487 (96%), Gaps = 5/487 (1%) Strand = Plus / Plus Query: 49 tgttcgagaattggatctttcatttcctggttctaccttcttactataacgtgtttttct 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17888 tgttcgagaattggatctttcatttcctggttctaccttcttactataacgtgtttttct 17947 Query: 109 tgggttttgggtgactaactttggattttgggttttttttacctgatttaggaggcgaat 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17948 tgggttttgggtgactaactttggattttgggttttttttacctgatttaggaggcgaat 18007 Query: 169 tggaaagaaatttggaaaatataggcaaaaaaagataatttgatgtcacgtgatgatgtg 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18008 tggaaagaaatttggaaaatataggcaaaaaaagataatttgatgtcacgtgatgatgtg 18067 Query: 229 attttatattacaatgttattccttccagtccaagaaggaatcaaagtacacctttaagt 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18068 attttatattacaatgttattccttccagtccaagaaggaatcaaagtacacctttaagt 18127 Query: 289 ggtgcaggcattgcccctcgtggttcggttgtcccta-tttttttttgatttatttttct 347 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 18128 ggtgcaggcattgcccctcgtggttcggttgtccctattttttttttgatttatttttct 18187 Query: 348 ggttgctaaggttagcccctattttgttcgcgacaggacttttagcgtttgacaatcaca 407 ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 18188 ggttgctaaggttagcccctattttgtccgcgacaggacttttagcgttgaacaatcaca 18247 Query: 408 taacctcatgatcacccaaaatgcacctggtacttttggttttcttaacttagggtaact 467 ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| || ||| Sbjct: 18248 taacctcatgatcacccaaaatgcacctgttactttt-gttttcttatctta-tgttact 18305 Query: 468 aacaattatttttctttttgggatggttggattcactttttttggaaccccctaacctac 527 ||||||||||||||| |||||||||| || |||||| |||||||||| | |||||||||| Sbjct: 18306 aacaattatttttctatttgggatggctgaattcac-ttttttggaa-cacctaacctac 18363 Query: 528 ccaaacg 534 ||||||| Sbjct: 18364 ccaaacg 18370 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,324 Number of Sequences: 1807 Number of extensions: 12324 Number of successful extensions: 144 Number of sequences better than 1.0e-20: 1 length of query: 984 length of database: 10,358,551 effective HSP length: 16 effective length of query: 968 effective length of database: 10,329,639 effective search space: 9999090552 effective search space used: 9999090552 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)