BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH08FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig874 1445 0.0
>3x_Contig874
Length = 1825
Score = 1445 bits (729), Expect = 0.0
Identities = 832/856 (97%), Gaps = 10/856 (1%)
Strand = Plus / Plus
Query: 86 tttatattgctgagcaaactagtcaccatcctcccaagtcatcttacttctatatgattc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tttatattgctgagcaaactagtcaccatcctcccaagtcatcttacttctatatgattc 571
Query: 146 ccgaatcaaacatcagagtagatggtaccacaattcccaaatctcgattcctaggtaact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ccgaatcaaacatcagagtagatggtaccacaattcccaaatctcgattcctaggtaact 631
Query: 206 ccacagctgcattttttgaagggttatccgtattgcaatttttggacatcactgacccaa 265
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ccacagctgcaatgatggaagggttatccgtattgcaatttttggacatcactgacccaa 691
Query: 266 agacaggaaagcctgaaaaatatacacttactcaacctaatatgtacgctagagggattc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agacaggaaagcctgaaaaatatacacttactcaacctaatatgtacgctagagggattc 751
Query: 326 tttttggtaaaatgaaacttgaattaggtgaccacatgcttattaagggccccaaatacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tttttggtaaaatgaaacttgaattaggtgaccacatgcttattaagggccccaaatacc 811
Query: 386 agatcgatatagaattcaagactaagggttttatttcaggtacctatgatgccattgaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agatcgatatagaattcaagactaagggttttatttcaggtacctatgatgccattgaag 871
Query: 446 gtattatcaaagattataatgaaaaagaatactatgaaattactggtaaatggaacgatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gtattatcaaagattataatgaaaaagaatactatgaaattactggtaaatggaacgatt 931
Query: 506 taatctattataaagatttaagagaaaagcattcgaagaaggctgtcttatttgatacta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 taatctattataaagatttaagagaaaagcattcgaagaaggctgtcttatttgatacta 991
Query: 566 acacggcagtaccactcaagccaagcgttagaccactagaagagcagggtgaatttgagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 acacggcagtaccactcaagccaagcgttagaccactagaagagcagggtgaatttgagt 1051
Query: 626 caagaagactntggaagaaagtcaccgacgcgttggcgaaacgtgatcatgttgaagcga 685
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 caagaagactttggaagaaagtcaccgacgcgttggcgaaacgtgatcatgttgaagcga 1111
Query: 686 cagacgagaaatt-aanatagaaaacaaccagagaattttagccaanaagaagatcgaag 744
||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 1112 cagacgagaaattcaaaatagaaaacaaccagagaattttagccaaaaagaggatcgaag 1171
Query: 745 atggcgtcgaattccatccannaactg-tcagaactgcttctcctggcgatgatttagaa 803
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1172 atggcgtcgaattccatcca-aaactgttcagaactgcttctcctggcgatgatttagaa 1230
Query: 804 -tttatgtctacaaaagcatt-caccagttaccgatcacgaatctcatgaggaccaga-t 860
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct: 1231 ttttatgtctacaaaagcattccaccaggtaccgatcacgaatctcatgaggaccagatt 1290
Query: 861 aaatcaattcttgaga-tgcaccaatcgttcccgtt--aaaaattactgaaaaa-tttct 916
||||||||||| |||| |||||||||||| |||| | |||| ||||||||||| |||||
Sbjct: 1291 aaatcaattctcgagattgcaccaatcgtccccggtcaaaaatttactgaaaaattttct 1350
Query: 917 attcccgcttaccaaa 932
||||||||||||||||
Sbjct: 1351 attcccgcttaccaaa 1366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6096
Number of Sequences: 1807
Number of extensions: 6096
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)