BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH08RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig611 1092 0.0
>3x_Contig611
Length = 2628
Score = 1092 bits (551), Expect = 0.0
Identities = 654/680 (96%), Gaps = 8/680 (1%)
Strand = Plus / Plus
Query: 47 tcgtatggtaaaaataaagtcataaattgtaagtgtctgtaaaacaagccaaggagttca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tcgtatggtaaaaataaagtcataaattgtaagtgtctgtaaaacaagccaaggagttca 993
Query: 107 agttctgcctcattttgtttaagcatgtccttcttatatagacaagaatattcttcccag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 agttctgcctcattttgtttaagcatgtccttcttatatagacaagaatattcttcccag 1053
Query: 167 ccatttttttggtccataattccaggaatagcctgtacatttgcagtggatttctgaggt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ccatttttttggtccataattccaggaatagcctgtacatttgcagtggatttctgaggt 1113
Query: 227 gttctacccttgactgtaatttcaaatcttgatattagacaataacataaccataatcgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 gttctacccttgactgtaatttcaaatcttgatattagacaataacataaccataatcgt 1173
Query: 287 cttctataatttttatacctaggatcaattctcatgtttccagtcggttcaagaaattgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 cttctataatttttatacctaggatcaattctcatgtttccagtcggttcaagaaattgt 1233
Query: 347 gatggatccctatcaagacccatatcagaaaccaaaggtcccatcatgccaataacacct 406
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1234 gatggatccctatcaagacccagatcagaaaccaaaggtcccatcatgccaataacacct 1293
Query: 407 tcggatgttgaatcgtagaatatactacataggtcaggttgatgagcaaggatgttccaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tcggatgttgaatcgtagaatatactacataggtcaggttgatgagcaaggatgttccaa 1353
Query: 467 agcagcatgtgccaagaaataacttcttcagttcttgactgatagatgttcaatatcgac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 agcagcatgtgccaagaaataacttcttcagttcttgactgatagatgttcaatatcgac 1413
Query: 527 actaattcagcggcagaagatgtttaattttttctccatttctgcaaaccccttcgattc 586
|||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |
Sbjct: 1414 actaattcagcggcagaagatg-ttaattttttctccagttctgcaaa-cccttcgatcc 1471
Query: 587 aagccctgtcgccatcggattttatgttgaacattctgtttcataanccctttgatcgaa 646
||||||||||||||||| | |||||||||||||| ||||| ||| | |||||||||||||
Sbjct: 1472 aagccctgtcgccatcgta-tttatgttgaacatcctgttccat-agccctttgatcgaa 1529
Query: 647 aaggccgnagtttccaatgggatttgggttgtttggaagttttaaattaagaaataaaga 706
|| |||| ||||||||||| ||| ||| | ||| ||||| ||| || ||| |||| |||
Sbjct: 1530 aa-gccgtagtttccaatgtgatatggatagtt--gaagtattagataaag-aatagaga 1585
Query: 707 ggttcaccaacttcattttg 726
|||||| ||||||||||||
Sbjct: 1586 tgttcactaacttcattttg 1605
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7851
Number of Sequences: 1807
Number of extensions: 7851
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)